Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00988 ATGGGTATTTCATGGAGTAGTAGCAGAAGAAGAAACAATTATATTCAGAACACACCTCCACCGCCACCGCCACCGCCACCGCCACCACCTTACTATTACTCTGCTGAATCTCATCCTCCACCTCCTCGACCGCCGCAAGGTTACTATTTTCCACCAACAACAACAACCCCGTATACCCCACACTGTACTAGCTATGTGGGTCCACCTCCTTTGCCTCCACCACCTCAACCTCAACCTCACACCCATTCTTCTTTCTACTACTCCAATCCCAATGGTTATGCAGTGGGTCGTTTTCATTACCACCCTTACTATGTGAATCAACATGCTGGGTGGGCTCCACCTCCCCCTTCTTCTGCTTCCACCCCACCACCCTATGTTGACCATCAAACTGCTAAGAATATAAGGAACTATGTTAATGTCCACAAAGATACCTTGCGCCTTGAGGTTGATGAGCACAACCCTGATCACCACCTTCTTTCCTTCGTTTTCGATGCTGTTTATGATGGGAGCATCACTATCTTCTACTTTGCCAAGGAAGAAGAGAAATGTAGGTTTGTTCCGCTATTTCCTGAAGCATTGGAGCCAATCAGAATCCCCTTTCAGAAAGGAGTTGACCAGAAATTTGCTCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAATCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACATGTTTGAAAACTCATGATGATTCCGTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGTAATGGTGGTGGTCCTTTCCAGATAAAAGTAGTTCGGCAGGTTCTTTGGATTGATGGTGTCCGTTATGAGTTGAGAGAATTATATGGAATAGAAAGCTCAACAGCAACAGATTTTGATGACAATGATCCAGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTCAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGGTGAACAATGGCGATCAATGA 1119 0.4486 MGISWSSSRRRNNYIQNTPPPPPPPPPPPPYYYSAESHPPPPRPPQGYYFPPTTTTPYTPHCTSYVGPPPLPPPPQPQPHTHSSFYYSNPNGYAVGRFHYHPYYVNQHAGWAPPPPSSASTPPPYVDHQTAKNIRNYVNVHKDTLRLEVDEHNPDHHLLSFVFDAVYDGSITIFYFAKEEEKCRFVPLFPEALEPIRIPFQKGVDQKFAQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETCLKTHDDSVLDASPHMQITQAVLEKSNGGGPFQIKVVRQVLWIDGVRYELRELYGIESSTATDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSQCAKALRLQSNKCPICRQSIEELIEIKVNNGDQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00988 372 SMART ring_2 317 355 IPR001841 -
Rops11g00988 372 MobiDBLite consensus disorder prediction 1 85 - -
Rops11g00988 372 SUPERFAMILY RING/U-box 316 362 - -
Rops11g00988 372 MobiDBLite consensus disorder prediction 1 15 - -
Rops11g00988 372 PANTHER MAHOGUNIN 39 367 IPR045194 GO:0061630
Rops11g00988 372 FunFam probable E3 ubiquitin-protein ligase LOG2 301 366 - -
Rops11g00988 372 Pfam Zinc finger, C3HC4 type (RING finger) 315 361 - -
Rops11g00988 372 CDD mRING-HC-C3HC5_MGRN1-like 315 356 IPR045195 -
Rops11g00988 372 ProSiteProfiles Zinc finger RING-type profile. 317 356 IPR001841 -
Rops11g00988 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 366 IPR013083 -
Rops11g00988 372 MobiDBLite consensus disorder prediction 16 51 - -
Rops11g00988 372 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00988 Rops-Chr11 14094340 14099672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00988 91 372 C3H Transcription Factor Family AT3G06140 57.770 9.85e-110 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00988 - - gsj:114373285 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00988 11 14094340 14099672 Rops11g00988 11 14094340 14099672 ECH