Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00953 ATGTCTTCTTCAGTTTCTGTCCAAGAAAAAGGTAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGGGAGCCAAATAAGATTATTCCTTCACCTCAACATGAAAGCCTCAGTTATGAATTCTCTGCTGAAGATTTTGAAATAACCTCAGTTCATGCACAAGCCATAGCTTCTGACCTGTGTAGTGTGAGCCAAGATCATTCTGATGGGTTGAAGCTTGACCTGGGATTGTCTAGCCCTGTAGTTTCATCTGAGGTCAGGCCTGACCAACCTAAGGAGGAACTCGAGGTGGATGAATTTCATGATGCTGATTGGAGTGATCTCACAGAAGCCCAGTTGGAAGAACTTGTATTGAGCAATTTGGACACCATTTTCAAGAGTGCTATTAAAAAAATTGTTGCCTGTGGCTACACTGAAGATGTTGCTACGAAGGCTATCTTAAGGTCTGGTATCTGTTATGGATGTAAAGACACCGTGTCTAATATAGTTGATAATACTTTAGCATTTTTAAGAAATGGCCAAGAGATTGATCCTTCACGAGAGCACTGTTTTGAAGATTTAATGCAGCTTGAGAAGTATATTTTAGCTGAATTGGTTTGTGTTCTTAGAGAGCTCAGGCCATTCTTCAGTACTGGGGATGCAATGTGGTGTTTGTTGATTTGTGACATGAATGTGTCCCATGCTTGTGCAATGAATGGTGACCCCTTAAGTAGTTTAGGTAGTGATGACATTGCTGATGGCTGTTCTTCTATCCAAACTGAATCACAATCAAAAGTAGAAACCAAAGGTCTTGAATTGAGTCTTCCGAGTCCTTGTAAATCAATTCCCCCATGTTCTCAATCCGAGAAATCCTTTGTGGCAGAAAATCCTGGTTTAAATAACTCAAATAATTCTAAAATTCTTGGTGGATTCTCGGAGAAAGAGGGTGCTAATTCTGGATGTGATTCTGTTGATAAGTCATTTAGTACTACTGGAACATCTCAATCTCCCCCAGTAGAAGAAAAGTGTGGGAGTGTTAGAAAGGTCCATTCTAGTATCGCCAAGAAGGACTACATTCTTCTACAGAAGTCATGCCACATGGAAAAAGGTTATCGGACATATGGGTCTAAAGGGTCTTCTAGAGGAGGAAAGCCGAGTGGCTTGAGTGGTTTAATGTTGGATAAAAAACTTAAATCTGTATCAGAATCTAATACCATAAACTTAAAGAAAGCATCCTTAAACATAAGCAAGGCAATGGGAATTAATGTGACACGAGACAATCTTAATGCTGCTTTCTCATCTATTGATGGACCATCTACCCCGACTGCATTTAACCTGGATTCTGCCGATACTAATTCTCAGTCATCCGATACTTCATCTTCAGTACATGAAGCAAATGCTATACCTGCAGTCAGTAGCCCAAATGCATTATCAGCTACAGATACTGACCTTTCTCTTTCATTGTCTTCGAAAAGCAAGTCTTCGGCAACACCTATCTGCTGCAATAATGAGGCACCTAATAGTAGTTGTGTGGGAATACCATATGACAAGTCCCTTGGACAATGGATACCCCAGGATAGAAAGGATGAAATGATTTTGAAGCTGGTTCCAAGGGTTCGGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCTGCTCGTCGGCTGAGTAAGGACAAGGCAGAGCTTAAGACGCTAAGGCAAGAAAAAGATGAAGTTGAACGTCTTAAAAAAGAGAAGCAATCTCTAGAAGAAAACACCATGAAGAAGCTTTCTGAGATGGAAAATGCTTTGTGTAAAGCAGGTGGACAGGTGGAACGGGCTAATGCTGCTGTCCGGAGGCTTGAGATGGAGAATGCTGCACTGAGGAAAGAGATGGAGGCTGCCAAGTTACGTGCAGCAGAATCAGCCACCAGCTTTCAAGACGTCTCTAGGAGAGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAAGCAGAAATCCTTGTTTCAGGAAGAACTAATGACTGAAAAACACAAACTGGCACAGCTGCAGCAGGAATTAGAGCAAGCTAAAGTGCAACAGCAGCAAGTTGAGGCTAGATGGCAGCAGGCAGCAAAGGCGAAAGAGGAACTTCTTCTGCAGGCCAGTTCTATAAGAAAAGAAAGAGAACAAATTGAGGAGTCTGCAAAATCCAAGGAGGATATGTTCAAATTAAAAGGAGAGGAGAATCTGCAGAGGTACAAAGATGGCATCCAGAAACTTGAAAAGGAAATTGCACAACTGAGACAGAAGACCGACTCTTCAAAAATTGCTGCACTGAGAAGGGGAATCGATGAAAGCTATGCCAGCAGCTGTATGGACATGAAAAATGGCACTGCCATGGAAGATCCCCGGTCCACTATTATCTCAGAAATGGTTAAAAAGTTGAGTGATTACTCTTTGACAGGGGGTGTGAAACGGGAAAGGGAATGTGTGATGTGCCTTTCTGAGGAGATGTCTGTTGTATTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGAGCTCCATGAGAAACAGGGTATGCAAGACTGTCCTTCTTGCAGGAGCCCCATTCAGGGGCGCATTTCTGTGCGTTATGCCCGTACATAA 2631 0.4246 MSSSVSVQEKGSRNKRKFRADPPLGEPNKIIPSPQHESLSYEFSAEDFEITSVHAQAIASDLCSVSQDHSDGLKLDLGLSSPVVSSEVRPDQPKEELEVDEFHDADWSDLTEAQLEELVLSNLDTIFKSAIKKIVACGYTEDVATKAILRSGICYGCKDTVSNIVDNTLAFLRNGQEIDPSREHCFEDLMQLEKYILAELVCVLRELRPFFSTGDAMWCLLICDMNVSHACAMNGDPLSSLGSDDIADGCSSIQTESQSKVETKGLELSLPSPCKSIPPCSQSEKSFVAENPGLNNSNNSKILGGFSEKEGANSGCDSVDKSFSTTGTSQSPPVEEKCGSVRKVHSSIAKKDYILLQKSCHMEKGYRTYGSKGSSRGGKPSGLSGLMLDKKLKSVSESNTINLKKASLNISKAMGINVTRDNLNAAFSSIDGPSTPTAFNLDSADTNSQSSDTSSSVHEANAIPAVSSPNALSATDTDLSLSLSSKSKSSATPICCNNEAPNSSCVGIPYDKSLGQWIPQDRKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLSKDKAELKTLRQEKDEVERLKKEKQSLEENTMKKLSEMENALCKAGGQVERANAAVRRLEMENAALRKEMEAAKLRAAESATSFQDVSRREKKTQMKFQSWEKQKSLFQEELMTEKHKLAQLQQELEQAKVQQQQVEARWQQAAKAKEELLLQASSIRKEREQIEESAKSKEDMFKLKGEENLQRYKDGIQKLEKEIAQLRQKTDSSKIAALRRGIDESYASSCMDMKNGTAMEDPRSTIISEMVKKLSDYSLTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQGRISVRYART* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00953 876 ProSiteProfiles Zinc finger RING-type profile. 822 862 IPR001841 -
Rops11g00953 876 Coils Coil 664 698 - -
Rops11g00953 876 Coils Coil 608 635 - -
Rops11g00953 876 Pfam Family of unknown function (DUF6592) 122 233 IPR046527 -
Rops11g00953 876 Coils Coil 552 596 - -
Rops11g00953 876 Coils Coil 735 769 - -
Rops11g00953 876 PANTHER OS05G0141500 PROTEIN 2 871 IPR046934 -
Rops11g00953 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 872 IPR013083 -
Rops11g00953 876 MobiDBLite consensus disorder prediction 317 338 - -
Rops11g00953 876 CDD RING-HC_MIP1-like 817 871 - -
Rops11g00953 876 MobiDBLite consensus disorder prediction 438 459 - -
Rops11g00953 876 Pfam Zinc finger, C3HC4 type (RING finger) 819 866 - -
Rops11g00953 876 MobiDBLite consensus disorder prediction 317 335 - -
Rops11g00953 876 Coils Coil 706 733 - -
Rops11g00953 876 MobiDBLite consensus disorder prediction 1 35 - -
Rops11g00953 876 SUPERFAMILY RING/U-box 817 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00953 Rops-Chr11 13590864 13595094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00953 - - gmx:100777140 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00953 11 13590864 13595094 Rops11g00953 11 13590864 13595094 ECH
Rops2g04807 2 87099033 87102755 Rops11g00953 11 13590864 13595094 PCT