Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00946 ATGGTGGTGGAAGAAGATGGAACCAGAGACGTGAGAAAGAGAAAGGGGAAGAGACGAAGATATGAGAAAGAGAGAGAAGAGAAGAGACGTTGCCTAAGAATACCAGCTGCAACCAAGGGCTTATTGGAAGACAGTTGTGCCATGCATTACGGAAAAAACAAGAAAAGTGAGTGCCATGCATTACGACATTTTCGCTTTAAGGCTGGCTTGCTTTATGCATCTGAAAGCAAGGCTTTGACTCGTCTAGCCTTGGCTACCATGAACGATGAACGAGAACCACAACCTTCCTCGAGCAATGGCGTCCACAAATTAGAAAGAAGACAAAAGGAGAATGCTTCTCTAAAAGGCAGAAGACCACGAATTGGGTTTTCTGATTCATTTTCAAGTATTGACTTGGCAGCTTTAGAGATTGAGGAGGGAAGCCAACCTGAGTACTCTCCTAGGAGTCAGGAATCTGATACCCCAAGTTCCAGGGCCAGCACTTCTGATTCTGAGGGTCAACCAGTTTTAGGAGGCAGTAATAATACCAATCAGTGGCGTGGTTTCTTTAAAATACTGAAGAAAGGATCACAAATGCCATTCCAAACCTTTCATCCGCTTAAAAACGTTCCAAAACTAACTAGGAGAAAAAGCAAAAGAATCAGGGAGGACCTGATTCCATCTCTGAATTCTCCAGCTCTTCAGTCATCTTTTGATTCTGAGTTTTGCTACTTCAAAGCTTCCTGGAAAAATTTCACACTCTCAGAGATCCAGGCTGCAACCAATAACTTTAGCCATGATAATTTAATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGCAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGCTGACAAGAGGGAGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATTGTGCATGTGGACCACCCCAATATCGCTAGATTGATTGGATATGGTGTTGAAGGGGGAATGTTTCTTGTTCTTCAGTTGTCCCCACATGGCAGCCTTTCATCCATACTTTATGGACCTAGAGAGAAACTGAATTGGAGCATCAGATATAAGATTGCTTTTGGGACTGCTGAGGGCCTTCGCTATCTTCATGAGGGATGCCAAAGAAGGATTATTCACAAAGATATCAAAGCTTCTAACATACTGCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCACCACACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTCTATGCTTATGGTGTTCTATTATTGGAGCTCATTACTGGGAGACAAGCATTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCAGATGATAACATCAAAGAGCTTGTTGATCCAGTTTTGGCTAATGCTTATGATGAAGAGCAGATGAAACTTGTAGTCTTAACAGCATCTCTTTGTATAGACCAGTCTTCAATGCAGCGACCCCATATGAGCCAGGTGTTACAGATACTAAGAGGTGAAGAAGACACCTTGAAATCCATTAAAGAACGGCAGAAGTCAAAACTTCAGAGGACATACTCTGAAGAACTAAATGATGCAGAAGAGTACAACTCAACTAAGTATTTGAATGACAGGGATCGACATTTGGAGACTCTACTCGGCTCCAGTAACTCTATTAAGGAAGAAAGTGATAAAAACTAG 1755 0.4239 MVVEEDGTRDVRKRKGKRRRYEKEREEKRRCLRIPAATKGLLEDSCAMHYGKNKKSECHALRHFRFKAGLLYASESKALTRLALATMNDEREPQPSSSNGVHKLERRQKENASLKGRRPRIGFSDSFSSIDLAALEIEEGSQPEYSPRSQESDTPSSRASTSDSEGQPVLGGSNNTNQWRGFFKILKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDSEFCYFKASWKNFTLSEIQAATNNFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSIRYKIAFGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSDDNIKELVDPVLANAYDEEQMKLVVLTASLCIDQSSMQRPHMSQVLQILRGEEDTLKSIKERQKSKLQRTYSEELNDAEEYNSTKYLNDRDRHLETLLGSSNSIKEESDKN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00946 584 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 227 331 - -
Rops11g00946 584 Pfam Protein tyrosine and serine/threonine kinase 260 521 IPR001245 GO:0004672|GO:0006468
Rops11g00946 584 SUPERFAMILY Protein kinase-like (PK-like) 237 522 IPR011009 -
Rops11g00946 584 MobiDBLite consensus disorder prediction 1 28 - -
Rops11g00946 584 Gene3D Transferase(Phosphotransferase) domain 1 334 551 - -
Rops11g00946 584 MobiDBLite consensus disorder prediction 139 176 - -
Rops11g00946 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Rops11g00946 584 PANTHER OS08G0249100 PROTEIN 89 556 IPR046958 -
Rops11g00946 584 MobiDBLite consensus disorder prediction 86 120 - -
Rops11g00946 584 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 334 536 - -
Rops11g00946 584 SMART serkin_6 257 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00946 584 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Rops11g00946 584 MobiDBLite consensus disorder prediction 102 116 - -
Rops11g00946 584 Gene3D Phosphorylase Kinase; domain 1 222 331 - -
Rops11g00946 584 ProSiteProfiles Protein kinase domain profile. 257 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00946 584 MobiDBLite consensus disorder prediction 143 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00946 Rops-Chr11 13463255 13470710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00946 228 554 Receptor kinase-like Gene Family AT1G53420 37.685 2.49e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops11g00946 PK_Tyr_Ser-Thr 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00946 - - lja:Lj6g3v1915960.1 866.3