Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00940 ATGAAAGGAACACAAAACCCACCACCACCCACCAACCACCGTATCTTACCTTCTCCGCCAAACATTCAACCACCCCCAACCACCGCTTTCCCCCATCAATTAGGGTTCCAATCTCCACGGAACCCTAATCCTCCAAACATGGACTCCGAAGACCCTTCTTCCTCCGTTTGGGACCTCAGTTACCTCCTCGACTTCAATCTCGACGACGATTCACCTTCTTTCCCTCCCTTAAACCTCGACACTGACCAATTCCACCCTCAGGAGATTCAACCCGCCAACGATAACAAGGTCCGAAAACGAGACCCGAGGCTCACTTGCTCCAACTTTCTCGCGGGTCATGTCCCATGTGCCTGCCCCGAAATTGACGCAAAGCTCGAAGACGATGGTTTACCTGGTAAGAAACGGGCTCGGTCCGCACGTGCGTCTTCTTCATCGGCACGGTGTCAGGTTCCTGGTTGCGAGGTTGATATCACTGAGCTTAAAGGCTATCATCGGAGACACAGGGTTTGTTTGAACTGTGCAAATGCTTCTACCGTTTTACTTCATGGTGAGGCCAAGAGATACTGTCAACAGTGTGGAAAGTTTCATGTTTTGTCTGATTTTGACGAAGGAAAACGAAGTTGTAGAAGGAAATTAGAGCGTCATAATAACAGGAGGAGGAGAAAGCCTGCTGATTCTAGAACTGCACCTGATCATGAAGTTCAACATCTTACTCAAGATGAGGATTTCAATTTTGATAAGGAAGCACCGAAAGATTGTTCAAATTTGAGTAATGAAAAAGCAGCTTCACCGGGTCATGAAGATGAACCAGTTGCCCATCTGTCTTCAACTCCTGATACCCAGATTATTAATAGTGATAGTGGTGGTGTGTCTTTTGTTGCTTCTGGTGATACACAAGTGAATGGTGGAAAAGATATTTCCAATGTTTCTAAGTCTCCTTCATATTGTGACAATAAGAGTGCTTATTCGTCTGTGTGCCAAACAGGTCGGATTTCTTTTAAACTTTATGATTGGAATCCTGCGGAATTTCCCAGAAGGCTACGACTCCAAATATTCCAATGGTTGGCAAGTATGCCTTTGGAGCTTGAGGGATATATTCGCCCTGGGTGCACAATCCTGACAATATTTATTGCGATGCCAAAATTTATGTGGATAAATTTACACAAGGACCCTCTGTACTATGTGCGGGATCTTGTTGCTCCCAGGAAGATGTTATCTGGAAGAGGCACCGCACTGATTCATCTGAATGACTTGATCTTCCGTGTGATGAAAGATGGAACTTCTGTGACAAAAGTTGAGGTAAACATGCAAGCACCAAGGCTTCACTATGTTCATCCCACATGCTTTGAAGCTGGTAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTGCAGCCCAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATATGAAGTATGAATATTGTGTTCCATCTCCACACAACTGGACTGAAGACAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATGTGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTCGAGAATGAGTCTGGGTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGCACTGAAATGAAGACATTGCAGCAAAAGTTAGATATATCTTCCCTTTCTAAACAATTCCAGTCTGCATCTGGTGGTTCTACCTGCAGCTCATGTGAAGCTTTTGCACATAGACACACATCTTCATCTGACTTACTTCTTGATATAGCATGGTTGCTTAAGGACCCTACTTCAGAAAATTTTGACAGAGTGATGACGGCTTCACAAGTTCAAAGATATTGTTATTTGTTGAATTTTCTAATATGCAATGACTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCGTAAAATCCAATTTTGTGCTTAATAGGATGAGTGATATTGACATGATGCAACTACTAAAATGCATGGATGATGCTAGAGATGCCATTTATCGGAAACATCAGAAGGCTGGAGGTGCAGTGGTGCACACTGAAGTTGACAGTCAGGGTATCCTGTTGAGAGCAGATGCAAAGTTGGGACATTTGAGAAGTCCTACTTCTAATGACAAAAATGATAGTCTACCACTTTTGAAGAGGGAGGTTATAATGAACATGGAAGAGTTCCCTAAAAGATGTAACCGTCGATATCTTGCCAGGGGATTCCTGAGCTCTCGACCAGCCATTTTTGTGGTTGTTTCATTTGCTGTTTGCCTTGGCGTATGTGTATCCATTCTTCATCATGGGAGGGTTAGTGAGTTGGCTTTATCTATTAGAAGGTGCTTGTTTAACTATTAG 2370 0.4253 MKGTQNPPPPTNHRILPSPPNIQPPPTTAFPHQLGFQSPRNPNPPNMDSEDPSSSVWDLSYLLDFNLDDDSPSFPPLNLDTDQFHPQEIQPANDNKVRKRDPRLTCSNFLAGHVPCACPEIDAKLEDDGLPGKKRARSARASSSSARCQVPGCEVDITELKGYHRRHRVCLNCANASTVLLHGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSRTAPDHEVQHLTQDEDFNFDKEAPKDCSNLSNEKAASPGHEDEPVAHLSSTPDTQIINSDSGGVSFVASGDTQVNGGKDISNVSKSPSYCDNKSAYSSVCQTGRISFKLYDWNPAEFPRRLRLQIFQWLASMPLELEGYIRPGCTILTIFIAMPKFMWINLHKDPLYYVRDLVAPRKMLSGRGTALIHLNDLIFRVMKDGTSVTKVEVNMQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYMKYEYCVPSPHNWTEDNISCAFDNQLYKICVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDISSLSKQFQSASGGSTCSSCEAFAHRHTSSSDLLLDIAWLLKDPTSENFDRVMTASQVQRYCYLLNFLICNDSTIILGKILPNLIILTESVKSNFVLNRMSDIDMMQLLKCMDDARDAIYRKHQKAGGAVVHTEVDSQGILLRADAKLGHLRSPTSNDKNDSLPLLKREVIMNMEEFPKRCNRRYLARGFLSSRPAIFVVVSFAVCLGVCVSILHHGRVSELALSIRRCLFNY* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00940 789 MobiDBLite consensus disorder prediction 10 27 - -
Rops11g00940 789 Pfam SBP domain 148 222 IPR004333 GO:0003677
Rops11g00940 789 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 626 IPR044817 GO:0003677
Rops11g00940 789 MobiDBLite consensus disorder prediction 28 55 - -
Rops11g00940 789 MobiDBLite consensus disorder prediction 212 280 - -
Rops11g00940 789 MobiDBLite consensus disorder prediction 223 254 - -
Rops11g00940 789 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
Rops11g00940 789 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Rops11g00940 789 MobiDBLite consensus disorder prediction 1 55 - -
Rops11g00940 789 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00940 Rops-Chr11 13347843 13358154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00940 44 783 SBP-box Gene Family AT5G18830 46.675 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops11g00940 SBP 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00940 - - aprc:113863838 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00940 11 13347843 13358154 Rops11g00940 11 13347843 13358154 ECH