Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00936 ATGCAAGCAGCTCGAGCATCAGCCACTGATGAAGCTTCTGAGATTTCCCATCAGACTGACGCCCAGCTACACAAAGAAGTTTCAGATAGTGGATCCGACGGGAGGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGCAGCACTTCTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATCTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTTAAAAGAAAAGGAAATGTAGCAGATGGCGAACGAAGCAGCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACAGTTCTAATGTGGCCTCCATATCCGAAAATGCATGGAGCAGATGCACTTCTCTTCCTGTTACACCAGCATCAAATCTGTCCCCTTCAGTTCCTACACCCGTTTCTGCAAGGACATATAATGATCAGATTAAGTCAAATAAAGATGTTGTTGGTTCTAAGGTTTCTAGGTCCCTTTCTATACCTGGACGGAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGCAGTGAACAGGAACAACAAGATCCAAATGATGATCAAATAACTCCTGTGCCGGTTGAAGATGCTGAGGATGAAGAAATTCCTGAAGAGGAGGCAGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGCTGCAAAGGTGCCCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTACCACAAAAGGAAACAAGAAATGTGAAGTATGTGGGCAAGAAGTTCAGAATTTACCTGTTACTTTGTTTCGTGTGTCCAGCTCTGTTCAACATCAGAACAGACAGTTGCAGGGTCAGCAGAATCTACGTCAGGAATCAATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGACTTGAAGACTCAAGCGATCATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTGGCATCTATTTTTGCAATCATACTCGCAATTAAAGAGTATATATGGACATACGCAGCTCTTGAGTTTGCACTTGTGGCTATAACTGTGCATCTGTTTTATTCTATGTTGCATCTGACAGCCATTTATGCAATACTACTCTCATCAGTTTTGGGTTTTGGAATTGCTATGGGGATCAACTATTTATATATCCAGTATGTCATTTGGAGACTTCAGGTCTCTCATAATGATAACCCAGTATGA 1269 0.4279 MQAARASATDEASEISHQTDAQLHKEVSDSGSDGRRPDISLQVPPRPLGFGSTSGGRVLDHSQSFSKGISSSRGFLRALSFKRKGNVADGERSSLLNSDPKTAADSSNVASISENAWSRCTSLPVTPASNLSPSVPTPVSARTYNDQIKSNKDVVGSKVSRSLSIPGRNVVIVRSVSFSTRSEQEQQDPNDDQITPVPVEDAEDEEIPEEEAVCRICLDVCDERNTFKMECSCKGALRLVHEECAIKWFTTKGNKKCEVCGQEVQNLPVTLFRVSSSVQHQNRQLQGQQNLRQESISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIIAAPFAFTLGLLASIFAIILAIKEYIWTYAALEFALVAITVHLFYSMLHLTAIYAILLSSVLGFGIAMGINYLYIQYVIWRLQVSHNDNPV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00936 422 PANTHER OS02G0165000 PROTEIN 32 418 - -
Rops11g00936 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 269 IPR013083 -
Rops11g00936 422 MobiDBLite consensus disorder prediction 17 33 - -
Rops11g00936 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Rops11g00936 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Rops11g00936 422 MobiDBLite consensus disorder prediction 1 16 - -
Rops11g00936 422 MobiDBLite consensus disorder prediction 1 61 - -
Rops11g00936 422 MobiDBLite consensus disorder prediction 88 108 - -
Rops11g00936 422 MobiDBLite consensus disorder prediction 91 108 - -
Rops11g00936 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
Rops11g00936 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Rops11g00936 422 SUPERFAMILY RING/U-box 210 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00936 Rops-Chr11 13270094 13279152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00936 227 321 C3H Transcription Factor Family AT5G59000 29.167 2.62e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00936 - - gmx:100527094 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00936 11 13270094 13279152 Rops11g00936 11 13270094 13279152 ECH