Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00925 ATGGCCATAATCAGGAGCATAATCCATGACATGAGATCGAGGTCACATAGGGTGGTGGTAGAAGAGGAAGAGGAAGAGGAAGTGGTGGTTGGAGATGGCATGAGGCAGAGTTGTTGGGCGAACATGCCTCAGGAGCTTCTCCGTGAGGTTCTCCTCCGAATAGAGGCATCGGAGGACACGTGGCCACCGCGGAGGAGCGTGGTGGCGTGTGCCGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGACATAGTGAAGACACCTGAACTTTCATCTAGAATAACCTTCCCCATCTCTGTTAAACAGCCTGGCCCAAGGGAGCATCTCCTCCAGTGCTTTATAAAGCGCAACCGGTCCACTCAAACATATTATTTGTTTCTAAGTTTAACTACTAGTACGCTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGCCCCACCTGCACAGATTATATCATCTCTCTAGATGCGGCTGATATGTCAAGAGGAAGCAACACCTATGTCGGGAAACTGAGATCAAATTTTCTGGGAACCAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGGGCAAAGATTACAAAAAGTCGCTCCACTAGGCTGGTGAACCTAAAACAGGTTTCACCCAACGTCCCAACCGGCAACTATCCAGTGGCCCACATCTCATATGAATTGAATGTGCTTGGCTCCAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCTCTGCAATTGAACCTGGAGGGGTAGCCCCAACGCCCACTGAGTTTTCTCTTAACAACATCGATATGTTTCCCTCATTCCCTTTTTTCCGAGCAAAATCAAATCGTGTGGAAAACTCCTTATCTGGACCCTTGGGTGATCAAAAGCATGGGAGCCTTGTGTTGAAAAACAAGGCTCCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCCTAAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTGCCCCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATTATCCTACAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1179 0.4869 MAIIRSIIHDMRSRSHRVVVEEEEEEEVVVGDGMRQSCWANMPQELLREVLLRIEASEDTWPPRRSVVACAGVCRSWREITKDIVKTPELSSRITFPISVKQPGPREHLLQCFIKRNRSTQTYYLFLSLTTSTLADDGKFLLAARKCRRPTCTDYIISLDAADMSRGSNTYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLVNLKQVSPNVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPASAIEPGGVAPTPTEFSLNNIDMFPSFPFFRAKSNRVENSLSGPLGDQKHGSLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVAAPENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00925 392 SUPERFAMILY F-box domain 34 83 IPR036047 GO:0005515
Rops11g00925 392 SUPERFAMILY Tubby C-terminal domain-like 88 392 IPR025659 -
Rops11g00925 392 FunFam Tubby-like F-box protein 96 392 - -
Rops11g00925 392 PANTHER TUBBY-RELATED 26 390 - -
Rops11g00925 392 Pfam Tub family 100 387 IPR000007 -
Rops11g00925 392 CDD F-box_AtTLP-like 39 83 - -
Rops11g00925 392 Gene3D - 32 94 - -
Rops11g00925 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Rops11g00925 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Rops11g00925 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Rops11g00925 392 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Rops11g00925 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Rops11g00925 392 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Rops11g00925 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Rops11g00925 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Rops11g00925 392 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Rops11g00925 392 Pfam F-box domain 39 86 IPR001810 GO:0005515
Rops11g00925 392 Gene3D Tubby Protein; Chain A 96 392 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00925 Rops-Chr11 13158555 13163364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00925 12 392 TUB Transcription Factor Family AT2G47900 73.107 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops11g00925 Tub 1.9e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00925 K19600 - gmx:100778346 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00925 11 13158555 13163364 Rops11g00925 11 13158555 13163364 ECH