Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00912 ATGGCGAGACCTTCGAAGCCACAAGTTTCTTCCGACGAAGCATTCTCCAACGCTTCAAGTTCATCAGAGGAAGAGCAAGTCAATGAACAAATCAACGAAGAAGAAGACGAGGAGGAGTTGGAAGCGGTGGCACGCTCTGCTAGTTCCGACGATGATGAAGTCGCCGAGGACAATTCTCCAGATTCTGAAGAAGATCCTGCCGCCGCTGAAGATGGTGACGACGAGGAACAGGGTGGAGATCATGTTGATCCTGAAATTAGCAAGCGTGAGAAGGCTAGATTAAAGGAAATGCAAAAAATGAAGAAACAGAAGATTCAGGATATTTTGGATGCGCAGAATGCAGCCATTGATGCTGACATGAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCTCATTTTGCAAAAGGTGATCAATCTTCATCTCAAAAGAAGTCACGGGGAAGGGGCCGTCATGCATCAAAAGTAACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGAAGAAGAAGATGGTGTAGCAAGCACACGTCTAGTGACACAACCATCATGTATCCAAGGAAAGTTGAGGGATTACCAACTGGCTGGACTAAACTGGCTTATACGATTGTACGAGAATGGAATAAATGGAATTCTAGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGCACGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTATTTTGCGTGCAATAAAGTTCCTTGGCAACCCTGATGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAATTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAAGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGACGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAATACAAACTATCGCCTTCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTATGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCCGAAACATTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCTAAAAAGGAAACCATTCTTAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAGAGCCCTATTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGAGAACGGAAGCGTCTCCTGAATATAGCCATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGGGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCAAAACTGAAAGAACGCGATTCTAGGGTCCTCATATTTTCACAGATGACTAGGCTGCTAGACATACTCGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGTATTGATGGCAATACTGGGGGGGATGATCGTGATGCCTCCATTGATGTTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTCGTCATTCTTTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGTCGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAACTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGCTGCATGATTTCCAGTTTTTCAATACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGCTATCTCATGCAGACACATCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAACGCCTGCTAGAAGAGGGATTTTCGTCATGGAGCCGGAGAGATTTTAATACTTTCATTAGGGCCTGTGAAAAATATGGCCGAAATGATATAAAAAATATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCTCGAAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGTTACAAGAATCCTTGGCTAGAGTTGAAGATACAGTATGGACAAAATAAAGGGAAATTATACAATGAAGAATGTGACAGATTCATGATATGCATTGTTCACAAACTTGGCTATGGGAACTGGGATGAGCTGAAGGCAGCATTTCGAACATCACCTTTGTTTAGGTTCGATTGGTTTGTTAAGTCTCGCACAACACAGGAACTTGCCAGGAGGTGTGACACCCTCATTCGGCTGGTAGAAAAAGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAGAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGGGTCCATCTTCTTTGAAGAAGCGCAAACAGTTAACTATGGATGATTATGCTAGCACGGGGAAGAAGAGAAAATAA 3216 0.4123 MARPSKPQVSSDEAFSNASSSSEEEQVNEQINEEEDEEELEAVARSASSDDDEVAEDNSPDSEEDPAAAEDGDDEEQGGDHVDPEISKREKARLKEMQKMKKQKIQDILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEDGVASTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDVFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKNIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICIVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTEGPSSLKKRKQLTMDDYASTGKKRK* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00912 1071 Gene3D - 935 1038 - -
Rops11g00912 1071 Gene3D - 197 412 IPR038718 -
Rops11g00912 1071 SUPERFAMILY Homeodomain-like 902 1024 IPR009057 -
Rops11g00912 1071 Pfam HAND 760 842 IPR015194 GO:0003677|GO:0006338|GO:0031491
Rops11g00912 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 694 IPR027417 -
Rops11g00912 1071 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 373 IPR014001 -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 81 99 - -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 1019 1071 - -
Rops11g00912 1071 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 759 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Rops11g00912 1071 SUPERFAMILY Homeodomain-like 850 900 IPR009057 -
Rops11g00912 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 417 709 - -
Rops11g00912 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 411 IPR027417 -
Rops11g00912 1071 Gene3D - 847 901 - -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 27 41 - -
Rops11g00912 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 847 901 - -
Rops11g00912 1071 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 97 1060 - -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 1019 1035 - -
Rops11g00912 1071 CDD SANT 850 894 IPR001005 -
Rops11g00912 1071 Gene3D - 417 709 IPR027417 -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 9 26 - -
Rops11g00912 1071 CDD DEXHc_SMARCA1_SMARCA5 193 413 IPR044754 GO:0005524
Rops11g00912 1071 SMART sant 847 896 IPR001005 -
Rops11g00912 1071 SMART sant 949 1010 IPR001005 -
Rops11g00912 1071 SMART helicmild6 527 611 IPR001650 -
Rops11g00912 1071 ProSiteProfiles SANT domain profile. 846 898 IPR017884 -
Rops11g00912 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 935 1038 - -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 142 178 - -
Rops11g00912 1071 FunFam Chromatin-remodeling complex ATPase 197 412 - -
Rops11g00912 1071 Gene3D iswi atpase 902 934 - -
Rops11g00912 1071 Gene3D ISWI, HAND domain 748 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Rops11g00912 1071 Pfam SLIDE 904 1014 IPR015195 GO:0003677|GO:0005634|GO:0006338
Rops11g00912 1071 MobiDBLite consensus disorder prediction 1049 1071 - -
Rops11g00912 1071 Pfam SNF2-related domain 209 476 IPR000330 GO:0005524|GO:0140658
Rops11g00912 1071 Pfam Helicase conserved C-terminal domain 499 611 IPR001650 -
Rops11g00912 1071 Coils Coil 17 41 - -
Rops11g00912 1071 SMART ultradead3 192 384 IPR014001 -
Rops11g00912 1071 CDD SF2_C_SNF 497 622 - -
Rops11g00912 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 748 846 - -
Rops11g00912 1071 Coils Coil 94 114 - -
Rops11g00912 1071 Coils Coil 1004 1031 - -
Rops11g00912 1071 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 652 IPR001650 -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 53 80 - -
Rops11g00912 1071 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00912 Rops-Chr11 13061175 13070284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00912 188 638 RAD5 or RAD16-like Gene Family AT1G02670 27.103 2.12e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops11g00912 SNF2_N 1.3e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00912 K11654 - gmx:100782649 1930.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00912 11 13061175 13070284 Rops11g00912 11 13061175 13070284 ECH
Rops2g04837 2 87546131 87554840 Rops11g00912 11 13061175 13070284 PCT