LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00911	ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTAGTGTGGTGAAGGAAGTTGCAAAGAAAGATTCTTTTAAAGAAGCTTCTCTTGCTCAATCTCATTATCCCAGTAGGGTCAGCTCAGATAAATCTAAATCACGAAGTGTCTCAGATCCTAAGAAGGAAACACCAGTTCCAAAGGATGGTCCAACTGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCTGAATGTTTACTAGGTGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGCCTTGAGAGCACGGGACAGGTAGTTGCTGTAAAACAGCTTGACCGGAATGGTCTTCAAGGAAATCGAGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTGTTACATCATCCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGCGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAAATAGCAGCTGGTGCAGCAAAGGGGTTGGAATATTTGCATGACAAGGCAAATCCCCCTGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGATGAGGGTTTTCATCCCAAGTTATCAGATTTTGGGCTGGCAAAACTTGGTCCTGTTGGTGACAAGACTCATGTATCCACACGAGTTATGGGAACATACGGCTATTGTGCCCCAGAATATGCTATGACTGGTCAACTAACTCTGAAATCAGACGTCTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACCGGGCGAAAAGCTATTGATAATACACGTTCACATGGAGAGCACAATCTCGTGGCATGGGCACGGCCTCTTTTTAAAGACCGTAGGAAGTTCCCTAAAATGGCTGACCCTCTACTTCAAGGCCAGTATCCAATGCGAGGACTGTACCAAGCACTTGCGGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTTTCATATCTGGCTTCCCAGACATATGATCCAAATGCAGCCAGCCAGTCTAACCGGGTTGGTCCATCAACCCCTAGGCACAGGGATGACAGAAGGAGCATGGCAGATAGTGTTGTGGATAGCCCTGACCGGGGACGGCTCGGCTCCCCTTCCACCCACAGAAACTCACCTGATTTCAGGAAGAGAGATGGTAGGGATTCAAATGCTGGGACTGAGTTGGGCAGGAGTGACAATGGTGGTGGATCAGGGAGAAAATGGGGATTGGATAATTTGGAAAGGCAGGAATCTCAGAGAGACAGCCCTGTACATACTGGAAGAGCTAGAGAGACTCCAAGGAACCGTGACCTCGACAGAGAGCGTGCAGTTGCAGAAGCAAAAGTTTGGGGTGAGAATTTGAGAGAGAAGAAGAGAGCAAATGCCATGGGTAGCTTTGATGCTACAAATGAATGA	1530	0.4621	MGGCFPCFGSSNKEDSSVVKEVAKKDSFKEASLAQSHYPSRVSSDKSKSRSVSDPKKETPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRSHGEHNLVAWARPLFKDRRKFPKMADPLLQGQYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALSYLASQTYDPNAASQSNRVGPSTPRHRDDRRSMADSVVDSPDRGRLGSPSTHRNSPDFRKRDGRDSNAGTELGRSDNGGGSGRKWGLDNLERQESQRDSPVHTGRARETPRNRDLDRERAVAEAKVWGENLREKKRANAMGSFDATNE*	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00911	509	FunFam	Serine/threonine-protein kinase PBS1	60	163	-	-
	Rops11g00911	509	MobiDBLite	consensus disorder prediction	383	399	-	-
	Rops11g00911	509	Pfam	Protein kinase domain	92	302	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g00911	509	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	210	222	IPR008271	GO:0004672\|GO:0006468
	Rops11g00911	509	FunFam	Serine/threonine-protein kinase PBS1	164	379	-	-
	Rops11g00911	509	ProSitePatterns	Protein kinases ATP-binding region signature.	93	116	IPR017441	GO:0005524
	Rops11g00911	509	MobiDBLite	consensus disorder prediction	371	480	-	-
	Rops11g00911	509	SMART	serkin_6	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g00911	509	SUPERFAMILY	Protein kinase-like (PK-like)	69	361	IPR011009	-
	Rops11g00911	509	ProSiteProfiles	Protein kinase domain profile.	87	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g00911	509	MobiDBLite	consensus disorder prediction	43	63	-	-
	Rops11g00911	509	Gene3D	Phosphorylase Kinase; domain 1	60	163	-	-
	Rops11g00911	509	MobiDBLite	consensus disorder prediction	30	68	-	-
	Rops11g00911	509	CDD	STKc_IRAK	93	361	-	-
	Rops11g00911	509	MobiDBLite	consensus disorder prediction	415	430	-	-
	Rops11g00911	509	PANTHER	OS07G0668900 PROTEIN	4	374	-	-
	Rops11g00911	509	Gene3D	Transferase(Phosphotransferase) domain 1	164	381	-	-
	Rops11g00911	509	MobiDBLite	consensus disorder prediction	448	480	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00911	Rops-Chr11	13052451	13059625	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g00911	67	366	Glycoside Hydrolase	AT3G07070	76.000	4.81e-171	487

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Rops11g00911		Pkinase	6.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00911	-		-	gmx:100814575	931.398