Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00901 ATGGGTAGAGACAGATCATCACAGTATATGGTGGTGATTGTAGGGGCAGCAACAACTGTAATTGTGATGAAATTGGTGAGCCTTGTGGCTGCAGTAATCATGGTGGAGGTGGAATTGGCTACTGCAGCAGGAGGCAATGGTGACAACAGTGGCAGTGGTAATGGAGGAAATTCATATGTATATCTTGGACGGCCGTGGGGACCTTTTGGAAGGGTGGTCTTTGCCTACACTTATATGGATCAATGTATAAGGCATGTTGGCTGGGATAACTGGGGGAAGATTGAGAATGAGAGAAGTGCATGCTTCTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCCAAACGAGCAACATGGTCTAGAGAATTGATGGATGAAGATGCAGAGCAGTTCCGTATGCATCCTTTCATTGATCCAGAACCAGATAGACCTTGGCTTGCTCAAAGAATGGCCTTGAGGATTCCATATTCTGCTTAG 480 0.4583 MGRDRSSQYMVVIVGAATTVIVMKLVSLVAAVIMVEVELATAAGGNGDNSGSGNGGNSYVYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGKIENERSACFYEYRCFGPGCCPSKRATWSRELMDEDAEQFRMHPFIDPEPDRPWLAQRMALRIPYSA* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00901 159 SUPERFAMILY Pectin lyase-like 47 145 IPR011050 -
Rops11g00901 159 Gene3D - 40 154 IPR012334 -
Rops11g00901 159 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 41 141 - -
Rops11g00901 159 Pfam Pectinesterase 57 139 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00901 Rops-Chr11 12940594 12942221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00901 56 152 Carbohydrate Esterase AT5G47500 37.755 4.89e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00901 K01051 - gmx:100795636 227.254