Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00887 ATGTCTACCTCTAGAACCTCAGATACTTCCTTCAAAAGATATGAGCCCAATCAAACCCAAATGAATTTATCTCTTCTCCAACGTAACATATCTCCTTGTGGTGAGAGAAGGGGGCGAAGAAAGCAAGCAGAACCAGGGAGGTTTCTTGGGGTAAGGAGACGCCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTCTTGCTTATGATAGAGCTGCTTTGTCCATGAAAGGTAGCCAAGCAAGAACCAACTTCATATACTCAGATGATACCAATTTTCACAATGTTCTTACTCCTATGGATGTTCAAGCTCTCTTACCAGCTTCACAGTTCCTCACTAACACTCAAAGCACACAACCCACCAATCAAAATAGCCTATCTCAACTTGATACTTCTTCCCACATTGAAAACTCCTCCTCCCACTTGAACCATCATGACATGTGTGCTGAAACTGCATATGGGTCACCTCAGGATGATAATTTCTTCTTCTCCAATGATTCCAACTCAGGTTATCTTGAATGCATAGTTCCTGATAATTGTTTCAGACCTGTTTCTAATTCCAACAGTTCAAACATAAGGGAGAGCAATGTCAGTGCCTCAACTGACCAAAAGGTTAGCTCAGTTAACACAAACTCCATGCAGGGTCAATCACATTTTGACAACACTGCATTCTCTCAAGAAGCCTTCAACACGCAAACAATGGCCTCTAACTTTGCAGATTTTTCTTACCCAAATGAACTTAGTCAAGGATTATGGGATAATCAGCAATCATGGGATTGCAATTCCAATGAACTTTCAGCTATGTTTAACAATCCATTAAGGAATGAAGATGGATGCATGTATGCATCATATCCCATCTCAAGCTATGGGCTAATGACTGAGGCTGTTTCTTCAACTACCTATTCTCCATCACTTCCTCCTTCTGGGGATGTTGACTTGGGACACTCACTCTTCTAA 1011 0.4154 MSTSRTSDTSFKRYEPNQTQMNLSLLQRNISPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAALSMKGSQARTNFIYSDDTNFHNVLTPMDVQALLPASQFLTNTQSTQPTNQNSLSQLDTSSHIENSSSHLNHHDMCAETAYGSPQDDNFFFSNDSNSGYLECIVPDNCFRPVSNSNSSNIRESNVSASTDQKVSSVNTNSMQGQSHFDNTAFSQEAFNTQTMASNFADFSYPNELSQGLWDNQQSWDCNSNELSAMFNNPLRNEDGCMYASYPISSYGLMTEAVSSTTYSPSLPPSGDVDLGHSLF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00887 336 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Rops11g00887 336 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Rops11g00887 336 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Rops11g00887 336 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Rops11g00887 336 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Rops11g00887 336 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Rops11g00887 336 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Rops11g00887 336 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Rops11g00887 336 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 234 - -
Rops11g00887 336 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Rops11g00887 336 MobiDBLite consensus disorder prediction 133 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00887 Rops-Chr11 12770136 12771146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00887 1 310 AP2-EREBP Transcription Factor Family AT5G18560 38.611 2.78e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops11g00887 AP2 6.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00887 - - gmx:100812047 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g04848 2 87664674 87665684 Rops11g00887 11 12770136 12771146 PCT