Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00886 ATGGAGCAGTTCGGCCGGTCCAGTGAAGGTTCCCGGTCTGATCCATCGCCGGAATGGACCGGACCTGGGGGAGAAACCGGGCTCGAAGAGCCTATGTGGCAATTGGGGTTAGGTGCTGCTGAAGAGTCGTATCCACAACGCCCCGATGAAGCTGATTGTACCTATTATTTGAGAACCGGCTTCTGTGGCTTTGGTTCGCGGTGTCGGTTCAATCATCCTCGTGACCGTGGCGTGGTTATTGGAGCTGCGAGGACTGCAGGGCAGTATCCAGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGATCATGCAAATTTGGTGCGTCTTGCAAGTACCACCACCCTAGGCAGGCAGGAGGCACTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGGCAGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACCGGAGAGTGCAAGTTTGGCGCAACTTGTAAATTCCATCATCCGCTTCCTGCTGGCACCCAAATTCCACCTCCATCTCCAGTTCCCCCAGTTTCACCTTTACCTGTACCAGTACCTTCGCCATTATATCCAACCGTTCAACCTCCATCAGGTCCATCATCTCAACAAATTGGTGTATTCGTTGCAAGGCCACCTATGCTACCTGGTTCGTTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCCCCTACCATGGTCCCTATTTCTGGCTGGGGCCCTTATCAGACAAGCCCCGTACTTCCTTCTAGTACTCCATCTAATGTTGGTTCAACACAGCTTTATGGGATCACCCAACTACCTTCATCAGTAGCTGCCTATGCTGGGCCTTATCAACTTTCTGGTTCCTCAGTTGGTCCTTCGAGCAGTAGTAAGAAGGAGCAGTCATTTCCAGAAAGGTCTAATCAACCAGAATACCAGTATTACTCGAAAACAGGGGAGTTGAATTTTGGTCCATCATTTAGGAATCCCCATCCACCAGACATGAGTGCACCAAAAGTGAATGTGATCCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTCGGTCCTGCATGCAAATTTGATCATCCTATGGCTTCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACGTGCCTGTTGTACCCTATCCTGTGGGTTCATCAATTGGTACCCTTGCTCCATCATCAGAGTTGCAGCCTGAACATACCACAGGATCCAACAAAGAGTCTGTTCCATCCAGAATATCTTCATCAATGAGCACGTTGACTGGATCAGTTGGCTTGACTTTGTCGACTGGTGAACCTGTTTCTCAATCAAACGCTCAACCATCTGCTCAAAGTTCTGTTCCTTTAACAGCTGCCAGTACCACCACTAGTAGCAATGTCTCTCACACCTCAAGCTAA 1437 0.4955 MEQFGRSSEGSRSDPSPEWTGPGGETGLEEPMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRFNHPRDRGVVIGAARTAGQYPERVGQPVCQYYMRTRSCKFGASCKYHHPRQAGGTATPVSLNYYGYPLRQGEKECSYYVKTGECKFGATCKFHHPLPAGTQIPPPSPVPPVSPLPVPVPSPLYPTVQPPSGPSSQQIGVFVARPPMLPGSLVQSPYGPVVLSPTMVPISGWGPYQTSPVLPSSTPSNVGSTQLYGITQLPSSVAAYAGPYQLSGSSVGPSSSSKKEQSFPERSNQPEYQYYSKTGELNFGPSFRNPHPPDMSAPKVNVILSPAGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMASLSYSPSASSLADVPVVPYPVGSSIGTLAPSSELQPEHTTGSNKESVPSRISSSMSTLTGSVGLTLSTGEPVSQSNAQPSAQSSVPLTAASTTTSSNVSHTSS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00886 478 MobiDBLite consensus disorder prediction 1 15 - -
Rops11g00886 478 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Rops11g00886 478 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Rops11g00886 478 MobiDBLite consensus disorder prediction 283 305 - -
Rops11g00886 478 Gene3D - 39 121 - -
Rops11g00886 478 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Rops11g00886 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Rops11g00886 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 374 IPR000571 GO:0046872
Rops11g00886 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Rops11g00886 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Rops11g00886 478 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Rops11g00886 478 SUPERFAMILY CCCH zinc finger 351 377 IPR036855 GO:0046872
Rops11g00886 478 MobiDBLite consensus disorder prediction 403 478 - -
Rops11g00886 478 PANTHER PROTEIN PHOSPHATASE RELATED 37 405 - -
Rops11g00886 478 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Rops11g00886 478 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Rops11g00886 478 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Rops11g00886 478 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Rops11g00886 478 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Rops11g00886 478 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Rops11g00886 478 Gene3D - 122 171 - -
Rops11g00886 478 SUPERFAMILY CCCH zinc finger 94 120 IPR036855 GO:0046872
Rops11g00886 478 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00886 Rops-Chr11 12758361 12768011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00886 1 434 C2H2 Transcription Factor Family AT5G18550 54.664 1.35e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g00886 zf-CCCH 3.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00886 - - gmx:100812433 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00886 11 12758361 12768011 Rops11g00886 11 12758361 12768011 ECH
Rops2g04849 2 87667497 87672361 Rops11g00886 11 12758361 12768011 PCT