Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00853 ATGGAGGAGGATGAGAGTCAAGCACAAGCGTGTAAGTTCCCAAGAGTTGGAAATGGTAGAAACGAGTCAAACAAGATAGGTTCTACCAGAGGGAGTGATCAAGAAGATGGAGAGCTTAAAAGGAGAGGCAGTGGTGGAGGAAGTGATGGTAGCACAAACCATTTCCAAAGTAGTTGGCACCACTCTTCAAGAATCATTAGGGTATCTAGAGCATCTGGTGGCAAAGATAGGCACAGCAAGGTTATGACTTCGAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCAGTGACCACTGCCATTCAATTCTATGACCTTCAAGATCGCCTTGGTTATGACCAACCAAGCAAAGCAGTGGAGTGGTTAATAAAAGCTGCTGCTGATGCTATTTCAGAACTCCCTTCTCTCAACAACCCATTCCCAGATACACCACAGCAACCTAGTGATGAGAAAAGGCCAAGTGAAGGGGTAGATGGTGAGAACAACTTCCAACAGAACCAAAGCCAGAACCTTTCTTTGTCCAAATCTGCTTGTAGCAGCACTTCTGAGACAAGCAAAGGTTCTGGCTTGTCACTCTCAAGGTCTGAGATCCGTGTGAACCGTGTCAATGCAAGGGAGAGGGCAAGGAAAAGAACAGCAAAGGAGAAAGAAAACGAGTCTAGCATTGCACATCAACACCACAATGTGATGTCCCAAACTGCTTCTTTCACTGAACTCCTCACTGGTACAAGTCCCAATGGGTCAGTTCATCAGATCCATTGTGGTGATGAGCCTAGTCCATTCAACAAGAGGCATCAATGGTCTTCTTCACCCATGGACTACTTCAACTCAGGCCTTCTGGTGGGGCCTTCTTCCTCTTCAAGAACAACCCATCATCAATCTTCTTCTTCTTCAAGGTTCTCAGGACAAATCCAACTGGGACATTCTTTTCTTCCTGTTTCACCATTCAATGGTGAAAACCACTCAGATCAGCTGCAGCATTTCTCTTTCATGCATGGCCATCTTATGCCACAAGCTCAACCCGTGGTTACTTCTTCTTCGCAGCCTAGTGGGAGTGACTACAATCTCAACTTCACAGTCTCTTCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCGCTTTTGCCTCACCTTCAGAGCTTTCCTATGGCGACGGAACCCGCCATTCAGACCACAAGGGGAAAGCCAAGAACTAAGTTCCTCTTGCTCCATCTTCTTTCAGGAATTCTATTCTGTGGCCTTTCTTTATGTAGGAGCAGCAAGCTGTGTCCCAAGCTTGCCTTTCTGCAAAGTGGAGGGTACATTGTTTGTCATCAAGTGTTGGTATTTCTTCTTGGATAA 1353 0.4642 MEEDESQAQACKFPRVGNGRNESNKIGSTRGSDQEDGELKRRGSGGGSDGSTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAISELPSLNNPFPDTPQQPSDEKRPSEGVDGENNFQQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVNARERARKRTAKEKENESSIAHQHHNVMSQTASFTELLTGTSPNGSVHQIHCGDEPSPFNKRHQWSSSPMDYFNSGLLVGPSSSSRTTHHQSSSSSRFSGQIQLGHSFLPVSPFNGENHSDQLQHFSFMHGHLMPQAQPVVTSSSQPSGSDYNLNFTVSSGLAGYNRGTLQSNSPSLLPHLQSFPMATEPAIQTTRGKPRTKFLLLHLLSGILFCGLSLCRSSKLCPKLAFLQSGGYIVCHQVLVFLLG* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00853 450 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 372 IPR005333 GO:0003700
Rops11g00853 450 MobiDBLite consensus disorder prediction 1 63 - -
Rops11g00853 450 ProSiteProfiles R domain profile. 197 215 IPR017888 -
Rops11g00853 450 MobiDBLite consensus disorder prediction 277 300 - -
Rops11g00853 450 MobiDBLite consensus disorder prediction 132 227 - -
Rops11g00853 450 MobiDBLite consensus disorder prediction 29 43 - -
Rops11g00853 450 MobiDBLite consensus disorder prediction 157 197 - -
Rops11g00853 450 ProSiteProfiles TCP domain profile. 74 132 IPR017887 -
Rops11g00853 450 MobiDBLite consensus disorder prediction 46 63 - -
Rops11g00853 450 MobiDBLite consensus disorder prediction 198 222 - -
Rops11g00853 450 Pfam TCP family transcription factor 73 217 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00853 Rops-Chr11 12136690 12149644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00853 57 388 TCP Transcription Factor Family AT4G18390 48.895 8.47e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops11g00853 TCP 7.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00853 - - gmx:100806032 420.239