Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00851 ATGGCTTTTGAGCCATTGGTTTGGTATTGTCGTCCGGCTGCAAATGGAGTATGGACAAGAGTAGTTGAGAATGCCTTCGGTGCTTACACTCCTTGTGCAACTGACTCTCTGGTGATCTCCGTTTCTTATTTGGTACTTCTAGGCCTGTGTGTCTACCGCATATGGTTGATTAAGAAGGATTTCAAAGCCAAGAGGTTCCTTTTAAGGTCAAACCTCTACAATTATTTTCTGGGGGTTTTAGCTGCATATTGTGTGGCAGAGCCATTATACAGATTGATCATGGGAATATCAGTTCTAAATTTAGATGGGCAGACTTTTCTTGCTCCATTTGAGATAATTTCGCTGATCGTTGAGGCTCTTGCTTGGTGCTCTATGTTGATTTTGATTTGGATTGAAACTAAAGTCTACATCCGAGAATTCCGATGGTTTGTCAGATTTGGTTTGATTTATGCTATTGTAGGGGATGCTGTCATGTTCAATCTCGTCATTTCCATGAAGGAGTTCTATAGCAGATCTGTGCTGTATTTGTACATCAGCGAGGTGGTCTGCCAGGTTTTATTTGGAATACTTTTGCTTGTGTATGTTCCTACTTTGGATCCTTATCCAGGTTATACTCCCATTGGGAGCGAAATGGTTACTGATGCTGCATATGATGAACTCCCTGGAGGAGAGCTGATATGTCCCGAGAGGCGTGCCAACATATTGTCAAAAATAATTTTTTCTTGGATGAACCCCATCATGAAACTAGGATATAAAAGACCACTTACAGAGAGAGATATATGGAAATTAGATACATGGGACCGGACAGAGACACTGAACAATATGTTCCAGAAATGTTGGGCAGAGGAGTCTCAGAAGTCAAAACCTTGGCTTTTAAGAGCATTAAATGCAAGCCTTGGAGGAAGGTTTTGGTATGGAGGCTTTTGGAAGATTGGCAATGATGCTTCCCAATTTTTGGGGCCACTTATATTGAATCAGCTGCTACAGTCTATGCAAAATGGTGAACCAGCCTGGATTGGCTACGTTTATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTTCCGGCTAAGATCAACGCTGGTGGCTGCTGTATTTCGCAAGTCTCTAAGGCTTACTCATGAAGCACGAAAGCAATTTTTGAGTGGAAAAATAACCAACTTGATGACTACTGATGCTGAGGCTCTTCAGCAAATAAGCCAGTCACTTCATACTTTGTGGTCAGCTCCATTGCGAATTACCGTGTCCATGGTGCTTCTTTACCAACAACTAGGTGTTGCTTCCCTTCTTGGTGCTTTCCTGCTAGTTCTTATGTTCCCACTACAGACATTTATTATCAGCAGAATGCAGAAGTTGTCTAAGGAAGGATTACAACGTACAGACAAGAGAATTGGTCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACTGAGCGTCAGAAATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGGGTAATGGATTTATACTAAATAGCATTCCAGTTTTTGTAACTGTGATTTCATTTGGAGTATTCACTTTGCTTGGAGGGGATTTGACACCTGCAAGAGCTTTTACATCGCTTTCTCTGTTTGCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGTGGTTAATGCAAATGTATCCTTGAAGCGTCTGGAGGATTTGCTCTTAGCAGAAGAGAGAATACTTCTACCAAATCCACCTCTTGAGCCAACGTTACCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATGCAAAGCCAGAGAGGGCCACATTGTCAAACATAAATTTGGATATACCTGTTGGTAGCCTAGTTGCAGTTGTTGGCAGCACAGGAGAAGGGAAGACATCACTCGTATCTGCAATGCTTGGAGAACTTCCTCCGGTTGCAGATTCAACTGTTGTTTTGAGAGGAACAGTTGCTTATGTACCCCAAGTTTCATGGATTTTTAATGCAACTGTACGGGGTAATGTTTTGTTTGGCTCTGTCTTTGACTCTATAAGATATGAAAGGGCAATAGATGTGACTGAACTGCGCCATGACCTTGAGTTACTGCCTGGTGGTGATCTTACTGAAATTGGTGAAAGAGGGGTAAACATCAGTGGTGGCCAGAAGCAAAGAGTATCCATGGCCAGAGCTGTCTACTCCAATTCTGACGTGTATGTCTTTGATGACCCCCTAAGTGCTCTGGATGCGCATGTGGCTAGACAGGTTTTTGAGAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTGACAAACCAGCTGCATTTCCTTTCACAGGTTGATAGAATCATTTTGGTTCAAGAAGGTATGGTGAAGGAGGTGGGAACTTTTGAGGAACTCTCTAACCAGGGACCATTGTTCCAAAAGCTTATGGAAAATGCGGGAAAAATGGAGGAGTATGAAGAAGAAAAGGTAGACTCTGAAACCACTGATCAGAAGTCCTCTTCAAAACCAGTGGCCAATGGAGAAGTTAATGATCACACAAAGAGTGGAAGTAAATCTAAAGAAGGAAAATCAATCCTTATTAAACAGGAAGAACGAGAAACAGGTGTTGTCAGCTGGAATGTTCTAATGAGGTACAAAGATGCATTAGGAGGCTCTTGGGTGGTTATTATACTCTTTGCATGCTATGTCTTAACAGAAGTGTTAAGAGTGTCAAGTAGCACATGGTTAAGCCATTGGACTGATCAGAGTGCTTTAGAGGGTTATAATCCTGCCTTCTACAATCTCATATATGCAGCTTTTTCATTTGGTCAGGTTTTGGTGACACTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCTGCCAGAAGGTTGCATGAAGCCATGGTTAACTCCATATTACGAGCTCCCATGGTCTTCTTCCAGACAAATCCACTTGGAAGGGTCATCAACAGGTTCGCCAAGGATCTCGGCGACATCGATCGCAATGTTGCACCATTCGTGAACATGTTTCTAGGTCAAGTATCGCAGCTTCTCTCAACATTCATCCTCATAGGAATCGTCAGCACAATGTCCCTCTGGGCGATAATGCCATTGTTAGTACTCTTCTATGGAGCATATCTATACTATCAGAGCACAGCTCGTGAAGTGAAGCGATTAGATTCAATTAGCAGATCTCCTGTTTATGCACAATTTGGAGAAGCTCTTAATGGTTTGTCAACGATTCGCGCTTACAAAGCTTACGATCGAATGGCTGATATAAACGGAAGATCCATGGACAACAACATCAGATTCACGCTGGTGAACATTAGTGGAAACCGATGGCTCGCGATTCGATTGGAAACCCTAGGAGGCCTAATGATATGGTTCACTGCAACGTTTGCTGTAATGCAAAACGGTAGAGCAGAGAACCAGAAGGAATTTGCATCCACAATGGGATTGCTTCTCAGTTATGCTTTGAATATAACTAGCTTGCTAACTGGTGTTCTCAGGCTCGCAAGTTTGGCTGAGAATAGTTTGAATTCTGTTGAGCGTGTTGGAACTTACATTGATTTACCTTCGGAGGCTCCTTCTGTGATTGAAGATAATCGTCCTCCCCCTGGTTGGCCATCTTCGGGTTCCATCAAATTCGAAGATGTCGTTCTTCGTTACAGGCCCGAACTTCCTCCTGTGCTGCATGGACTTTCTTTCACGATTTTTCCGAGCGATAAGGTTGGCATTGTTGGGAGGACAGGCGCGGGAAAATCCAGCATGCTTAATGCTCTATTTCGAATTGTGGAATTGGAAAGAGGGAGAATATTGATTGATGATTGTGATATTGCCAAATTTGGGCTGGCTGATTTGCGTAAAGTTCTTGGGATTATACCACAATCTCCTGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCATTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAAAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGGTATCTGAGGCAGGAGAGAACTTCAGTGTTGGACAGAGGCAACTGTTGAGTCTTTCCAGGGCTTTATTGCGGAGATCGAAGATATTAGTACTTGACGAGGCCACTGCAGCAGTTGATGTTAGAACAGACGCACTCATACAGAAAACAATCCGAGAGGAATTTAAATCCTGTACAATGCTTATTATTGCTCATCGCCTTAACACCATTATTGACTGTGATCGGATTCTTTTGATTGATGGTGGTAAGGTTCTTGAATATGATACCCCCGAGGAGCTGCTGTCAAATGAAGGTAGTGCTTTCTCTAAGATGGTGCAAAGTACAGGAGCTGCAAATGCTCAATACTTACGCAGCATAGCACTTGGTGGGGACAAATCAGGAAGAGGAGAGAACAAACATCTAGATGGTCAGAGAAAATGGCTGGCTTCTTCTCGGTGGGCTGCTGCAGCCCAATTTGCTCTTGCCGTCAGTCTCACCTCATCGCAGAATGACCTACAACGATTAGAAGTAGAAGATGACAACAGTATTCTCAAGAAGACAAAGGATGCTCTGATAACTTTGCAGGGAGTTTTGGAACGGAAGCATGATAAAGAAATTGAGGAATCTTTAGAACAGCGCCAAATATCCCCCGAGGGATGGTGGTCATCGCTTTACAAGATGATTGAAGGTCTTGCAATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGACTACAGTTTTGAGGACAGATCAATTAACTTTGATCAAGTTGATATGTAG 4860 0.427 MAFEPLVWYCRPAANGVWTRVVENAFGAYTPCATDSLVISVSYLVLLGLCVYRIWLIKKDFKAKRFLLRSNLYNYFLGVLAAYCVAEPLYRLIMGISVLNLDGQTFLAPFEIISLIVEALAWCSMLILIWIETKVYIREFRWFVRFGLIYAIVGDAVMFNLVISMKEFYSRSVLYLYISEVVCQVLFGILLLVYVPTLDPYPGYTPIGSEMVTDAAYDELPGGELICPERRANILSKIIFSWMNPIMKLGYKRPLTERDIWKLDTWDRTETLNNMFQKCWAEESQKSKPWLLRALNASLGGRFWYGGFWKIGNDASQFLGPLILNQLLQSMQNGEPAWIGYVYAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFLSGKITNLMTTDAEALQQISQSLHTLWSAPLRITVSMVLLYQQLGVASLLGAFLLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSKVLSVRNDELSWFRKASLLGAGNGFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEDLLLAEERILLPNPPLEPTLPAISIKNGYFSWDAKPERATLSNINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPPVADSTVVLRGTVAYVPQVSWIFNATVRGNVLFGSVFDSIRYERAIDVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYVFDDPLSALDAHVARQVFEKCIKGELRGKTRVLVTNQLHFLSQVDRIILVQEGMVKEVGTFEELSNQGPLFQKLMENAGKMEEYEEEKVDSETTDQKSSSKPVANGEVNDHTKSGSKSKEGKSILIKQEERETGVVSWNVLMRYKDALGGSWVVIILFACYVLTEVLRVSSSTWLSHWTDQSALEGYNPAFYNLIYAAFSFGQVLVTLTNSYWLIISSLYAARRLHEAMVNSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWFTATFAVMQNGRAENQKEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGTYIDLPSEAPSVIEDNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLIDGGKVLEYDTPEELLSNEGSAFSKMVQSTGAANAQYLRSIALGGDKSGRGENKHLDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQRLEVEDDNSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPEGWWSSLYKMIEGLAMMSRLARNRLHQSDYSFEDRSINFDQVDM* 1620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00851 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1477 - -
Rops11g00851 1619 CDD ABCC_MRP_domain1 615 815 - -
Rops11g00851 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00851 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1468 IPR027417 -
Rops11g00851 1619 Gene3D - 1220 1473 IPR027417 -
Rops11g00851 1619 FunFam ABC transporter C family member 2 609 855 - -
Rops11g00851 1619 SUPERFAMILY ABC transporter transmembrane region 288 591 IPR036640 GO:0005524|GO:0016020
Rops11g00851 1619 Gene3D - 609 865 IPR027417 -
Rops11g00851 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00851 1619 FunFam ABC transporter C family member 2 279 600 - -
Rops11g00851 1619 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Rops11g00851 1619 FunFam Multidrug resistance-associated protein member 4 1221 1473 - -
Rops11g00851 1619 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Rops11g00851 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Rops11g00851 1619 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524|GO:0016887
Rops11g00851 1619 SUPERFAMILY ABC transporter transmembrane region 914 1217 IPR036640 GO:0005524|GO:0016020
Rops11g00851 1619 Gene3D ABC transporter type 1, transmembrane domain 275 601 IPR036640 GO:0005524|GO:0016020
Rops11g00851 1619 Gene3D ABC transporter type 1, transmembrane domain 879 1218 IPR036640 GO:0005524|GO:0016020
Rops11g00851 1619 MobiDBLite consensus disorder prediction 858 873 - -
Rops11g00851 1619 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Rops11g00851 1619 Pfam ABC transporter transmembrane region 916 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00851 1619 Pfam ABC transporter transmembrane region 304 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00851 1619 CDD ABCC_MRP_domain2 1235 1455 - -
Rops11g00851 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Rops11g00851 1619 FunFam ABC transporter C family member 2 880 1218 - -
Rops11g00851 1619 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Rops11g00851 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 838 IPR027417 -
Rops11g00851 1619 SMART AAA_5 642 822 IPR003593 GO:0016887
Rops11g00851 1619 SMART AAA_5 1263 1456 IPR003593 GO:0016887
Rops11g00851 1619 MobiDBLite consensus disorder prediction 844 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00851 Rops-Chr11 12053846 12075668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00851 1234 1477 Calmodulin-binding Proteins AT2G36910 30.400 2.90e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00851 - - gmx:100795004 2882.43