Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00818 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCCGGAAGGGGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAATCGCGTGGTTTACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCGACCAACAAGGAAGTGGATGCCCATATTCCAAACTATCCAAGCTTACCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGCTGAGACTGATGAAGTTTATGCACAGATGACCTTGCAACCTCTGAGTCCTCAAGAGCAAAAGGAGGCATATCTTCCAGCAGAATTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACTAGCACTCACGGGGGATTCTCTGTACCTCGCCGGGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAGCAGCCTCCTGCTCAGGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAACCCAAAAGGCATCTACTTACTACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTTGGCATCCGCCGTGCTAATCGCCCGCAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACCTGGGGCTTCTTGCTGCGGCAGCTCACGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTACTAGCCCCTCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGATGAGTCTAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGCCAAATTCACATTGGCGTTCGGTAAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTTTATGGGAAATCGAGCCATTAACAACATTTCCTATGTATCCATCCCCATTCTCTCTTAGGCTTAAACGACCATGGCCTCCGGGATTGCCTTCATTCCATGGCATGAAAGATGATGATTTTGGCATAAATTCTCCTTTGTTGTGGCTCCGAGACACCGATAGAGGCCTTCAGTCTCTTAATTTTCAGGGGATGGGGGTTAGTCCTTGGATGCAGCCAAGGTTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGATATGAGGAGTGTGGATCCTTCCAAACAGCATCCCGGTTCCTTACTTCAATTTCAGCAACCACATAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAACAGTCACAACCCCAACAGGTTTTTCAAAATAATCAGGAGAATCAACATCCGTTGCAGTCTCAGCTGCAAACTCAGACCAATCTTCAGCAGCATCTACAGCATCAGCACTCATTCAATAGTCAGCATCATAATCACAACCAGCAGCATCAGCAGCAACAACAAAGTCAACAGCAAGTGGTAGATAATCAGCAGATTTCCAATGTAGTCTCTACGATGTCTCAGTTTGTTTCAGCACCTCAACCTCAATCATCACCTATGCAAGCTCTCTCTTCACTGTGTCAACAGCAAAGTTTTTCTGATTCAAATGGGAATCCTGTGACTACTACTGTTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTCTGAATCCTCCAAGAACTAGCTCTTGGATTCCTGTTCAAAATTCAACCACATGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTATCTTCTGGAGCATCTCAATGTGTTCTGCCTCAAGTGGAGCAGTTAGGGCAGCCACACAGTAGCATATCTCAAAATGCTATTACATTGCCACCATTTCCTGGCAGGGAATGCTCAATAGACCAAGAAGGGAGCAACAATCAGAACCATCTTTTATTTGGTGTTAATATAGAGCCCTCGTCTCTTCTAATGCATAATGGAATGTCAAGCCTTAAGGGGATCAGCAGCAACAGTGACTCCTCAACCGTGGTCTATCAATCTTCCACATACCTGAATACGACAGGCACTGATTCTTCATTGAATCATGGAATGACACACAGCATTGGCGAATCAGGCTTCCTGCAGACACCAGAGAATGCGGGGCAAGCAAACTCAGATAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTTGGAAGATCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTAGTGAGCTCGCTCGTATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCCCCCCTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAATGATGTTCTCCTCCTCGGTGATGACCCCTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCACCTCAGGAGATGCAGCAAATGGGCAGCACCGGCCGTGAGCTTTTGAACTTGGTTCCAATTCAAAGGTTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCAGTGGGTTAACAGCTGTGGGGTCTTTAGACTACTGA 2709 0.4644 MRLSSAGFSPPPPEGEKRVLDSELWHACAGPLVSLPAVGNRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRTSPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETDESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFSLRLKRPWPPGLPSFHGMKDDDFGINSPLLWLRDTDRGLQSLNFQGMGVSPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPSKQHPGSLLQFQQPHNFPNRTAALMQAQMLQQSQPQQVFQNNQENQHPLQSQLQTQTNLQQHLQHQHSFNSQHHNHNQQHQQQQQSQQQVVDNQQISNVVSTMSQFVSAPQPQSSPMQALSSLCQQQSFSDSNGNPVTTTVSPLHSILGSFPQDETSHLLNPPRTSSWIPVQNSTTWPSKRVAVDPLLSSGASQCVLPQVEQLGQPHSSISQNAITLPPFPGRECSIDQEGSNNQNHLLFGVNIEPSSLLMHNGMSSLKGISSNSDSSTVVYQSSTYLNTTGTDSSLNHGMTHSIGESGFLQTPENAGQANSDKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEMQQMGSTGRELLNLVPIQRFSNGICDDYVSRQDPRNLSSGLTAVGSLDY* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00818 902 Gene3D - 125 228 IPR015300 -
Rops11g00818 902 FunFam Auxin response factor 125 229 - -
Rops11g00818 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Rops11g00818 902 Gene3D - 291 363 - -
Rops11g00818 902 FunFam Auxin response factor 763 858 - -
Rops11g00818 902 Pfam AUX/IAA family 758 854 IPR033389 -
Rops11g00818 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 858 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops11g00818 902 MobiDBLite consensus disorder prediction 487 546 - -
Rops11g00818 902 SUPERFAMILY CAD & PB1 domains 765 844 - -
Rops11g00818 902 FunFam Auxin response factor 291 363 - -
Rops11g00818 902 ProSiteProfiles PB1 domain profile. 768 853 IPR000270 GO:0005515
Rops11g00818 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Rops11g00818 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Rops11g00818 902 CDD B3_DNA 126 227 IPR003340 GO:0003677
Rops11g00818 902 Gene3D - 764 858 - -
Rops11g00818 902 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops11g00818 902 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00818 Rops-Chr11 11653165 11660246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00818 1 483 B3 DNA Binding Superfamily AT1G30330 86.066 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops11g00818 AUX_IAA 1.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00818 - - gmx:100798719 1513.82