Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00805 ATGGCACAAAAAAGGGGTACAGGAGATGAAGGGCAAAAGCCAAAAGTGGAAGAAAAAGTTCCCTTTTACAAGCTTTTCACTTTTGCAGACCGTCTTGATGTGACTTTGATGATCACTGGTGTCATTTGTGCCGTGGCTAATGGGTTGTCTCAGCCTCTCGTGACCCTCATTTTTGGGAAGCTCATCAACACCTTTGGTACCACCGATCCATCCCACATTGTCAGGGAAGTTTCCAAGATTGCATTATTGTTTATCTACCTGGCAATTGGGTCTGGATTAGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCTGCACGAATCCGTAGCTTGTATTTGAAAACCATTTTAAAGCAGGACATTGCTTTCTTTGACACTGAAACAACAACTGGAGAAGTTATTGGGAGAATGTCTGGTGATACCATTCTCATTCAAGATGCTATGGGAGAAAAGGTTGGGAAGTTTATACAACTTATTTCATCCTTTTTTGGTGGCTACATCATTGCCTTTACAAGAGGGTGGCTACTTAGTCTAGTTTTGCTTGCATGTATTCCTTGCATGGTCATTGTTGGTGGAATCATATCGATGATGATGGCTAAAATGTCAACTCGTGGGCAAGCTGCTTATGCAGAAGCCGGAAATGTTGTGGAACAAACAGTTGGTGCCATTAGAACAGTTGCCTCTTTTACTGGAGAGAAAAAAGCAATTGAAAAGTATCATAACAAGTTAAGAATTGCTTATAATACTACAGTTCAACAAGGATTGGCCTCAGGGTTAGGAATGGGAGTACTTTTGCTGGTTACCTTCTGCACCTATGCACTTGCAATGTGGTATGGTTCCAAACTGATCGTTGAGAATGGATACAGTGGTGGAGACGTCTTCAATATAATCATATCAATTAACACTGGTGCAATGTCACTTGGTCAAACAACTCCATGCATAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTCAGACAATAAAAAGAAAACCAACAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATGAAGGGAGATATTGAACTCAAGGATGTTTACTTCAGATACCCTGCAAGGCCAGATATGCAGATCTTTTCTGGATTCTCATTCTATATCCCAAGTGGCACCACTGCTGCTTTAGTGGGTCAAAGTGGTAGTGGGAAATCAACTATAATAAGTTTATTAGAAAGATTTTATGACCCTGATGCTGGAGAAATACTTATAGATGGTGTCAATTTGAAGAACTTTCAAGTTAGATGGATAAGAGAACAAATTGGGCTTGTTGGTCAAGAACCTGTCCTGTTTACAGCTAGCCTCAAGGAGAACATAGCATATGGGAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCTATAACACTTGCCAATGCCAAAAAGTTCATTGATAAGCTGCCTGAGGGTCTTGACACAATGATGGGAGGGCATGGAACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGTAATTTTGAAGAACCCAAAAATCCTCCTCCTTGATGAAGCAACTAGTGCATTGGATGCTGAATCTGAACGTATTGTTCAAGAAGCATTGGAAAGAGTCATGACAAAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATCAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGGAAAATTGTGGAAAAAGGAACTCATGGTGAGTTAATCAACGATCCTGAAGGTGCTTATTCTCAGCTCATTCGTCTACAAGAAGGAGCTAAAGAAGCAGAAGGAAACCGTAATTCTGAAGCAGATAAATCTAAGAACAGTTTTAATTTAGATAGTCACATGACTAGATCTTCCACCCAAAGAAAATCCTTTGCAAGATCAATAAGCCAAAGTTCATCAGGCAGTAGACACTCTCTCTCACTTGGCTTTGCTCTTCCTAGTCTTGTTATGCATGATTCTGGAGAAGGAGCTAAAGGGGATCATGAAAGTAGTGAGCTTGATGATGTGAAGCGCCAAAATGTTTCTATTAAACGTTTAGCCATGTTGAACAAACCTGAGGTTCCTGTCTTACTACTTGGATCCATTGCTGCAGGAGTACATGGTGTTATTCTCCCTATATTTGGCCTCTTGCTTTCATCAGCTATCAATACTTTTTATAAACCTCCAAAACAGCTTAGAAAAGATTCTGATTTCTGGTCACTTCTGTTTGTTGTTTTGGGTCTTCTCACTTTTGTGGCTATCCCAGTGCAAAATTACTTATTTGGGATTGCTGGTGGAAAACTAATAGAAAGAATTCGTTCATTGACATTTAGAAAGGTTGTGCACCAAGAAATCAATTGGTTTGATCAACCATCAAACTCAAGTGGTGCAGTTAGTGCAAGGTTAGCTACTGATGCTTCCACAGTGAGAACTCTTGTTGGTGACTCTTTGGCCCTTATTGTGCAAAACATAGCAACAATCAAAGCAGGTCTAGTTATAGCATTCACAGCTAATTGGATTCTGGCCTTTGTTATTCTGGCTGTGTCACCATTGTTGCTCATACAAGGATATCTTCAGACCAAGTTGATAAAAGGATTCAGTGAAGATGCAAAGTTGCAATATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACCGTTGCATCATTCTGTGCTGAACCAAAGGTGATGGATATGTACCAGAATAAATGTTTAGCACCAGAAACACAAGGTGTTCGGCTAGGGTTTGTTAGTGGTGCAGGATTAGGTTTCTCTAATCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTCTTCTTGTGCAACACGGGAAAGCAACTTTTGGAGAAGTTTTCAAGGTTTTCTTTGCTTTAACTGTTACAGCAGTCGGTGTTTCCCAGTCTAGTGCCTTGGCACCAGATACTAACAAGGCCAAAGATTCCGCGGCTTCCATATTTGATATTCTTGACAGCAAACCAACGATTGATTCAAGTAGTACTGAGGGCATAACACAAGAAACGGTAAAAGGTGATATTGAACTTCAACATGTCAGCTTCAGATACCCAACAAGGCCTAATATTCAAATTTTCAATGATTTGTGTCTCCACATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATCAGTCTCTTAGAGAGATTTTATAACCCTGAATCTGGATCTGTATTACTAGATGGAGTGGATATCAAAAAGTTCAGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCAATTCTTTTCAATGAAAGCATTCGAGCCAACATTGCTTATGGCAAAGAGGGAGGTGCAACAGAAGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAAGTTCATAAGTTCTCTTCCAAGTGGTTATGACACCTCAGTCGGGGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAGCGTGTAGCCATTGCAAGAGCCATATTGAAAGACCCCAAAATCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCAGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAACAGAACTACTGTTGTGGTAGCTCACCGTCTTGCAACAATTAAAGGTGCTGACATTATAGCAGTAGTGAAAAATGGGGCGATTGCTGAGAAGGGAGGACATGATGCATTGATGAAGATTGATGGTGGAGTTTATGCTTCATTAGTAGCTCTCCATATTAGTGCATCATAG 3798 0.4097 MAQKRGTGDEGQKPKVEEKVPFYKLFTFADRLDVTLMITGVICAVANGLSQPLVTLIFGKLINTFGTTDPSHIVREVSKIALLFIYLAIGSGLASFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLISSFFGGYIIAFTRGWLLSLVLLACIPCMVIVGGIISMMMAKMSTRGQAAYAEAGNVVEQTVGAIRTVASFTGEKKAIEKYHNKLRIAYNTTVQQGLASGLGMGVLLLVTFCTYALAMWYGSKLIVENGYSGGDVFNIIISINTGAMSLGQTTPCINAFAAGQAAAYKMFQTIKRKPTIDAYDTSGVILEDMKGDIELKDVYFRYPARPDMQIFSGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPDAGEILIDGVNLKNFQVRWIREQIGLVGQEPVLFTASLKENIAYGKEGATDEEITTAITLANAKKFIDKLPEGLDTMMGGHGTQLSGGQKQRIAIARVILKNPKILLLDEATSALDAESERIVQEALERVMTKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHGELINDPEGAYSQLIRLQEGAKEAEGNRNSEADKSKNSFNLDSHMTRSSTQRKSFARSISQSSSGSRHSLSLGFALPSLVMHDSGEGAKGDHESSELDDVKRQNVSIKRLAMLNKPEVPVLLLGSIAAGVHGVILPIFGLLLSSAINTFYKPPKQLRKDSDFWSLLFVVLGLLTFVAIPVQNYLFGIAGGKLIERIRSLTFRKVVHQEINWFDQPSNSSGAVSARLATDASTVRTLVGDSLALIVQNIATIKAGLVIAFTANWILAFVILAVSPLLLIQGYLQTKLIKGFSEDAKLQYEEASQVANDAVGSIRTVASFCAEPKVMDMYQNKCLAPETQGVRLGFVSGAGLGFSNLALYCTNAFCFYIGSLLVQHGKATFGEVFKVFFALTVTAVGVSQSSALAPDTNKAKDSAASIFDILDSKPTIDSSSTEGITQETVKGDIELQHVSFRYPTRPNIQIFNDLCLHIPAGKTVALVGESGSGKSTVISLLERFYNPESGSVLLDGVDIKKFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAAQAANAHKFISSLPSGYDTSVGERGTQLSGGQKQRVAIARAILKDPKILLLDEATSALDAESERIVQEALDRVSVNRTTVVVAHRLATIKGADIIAVVKNGAIAEKGGHDALMKIDGGVYASLVALHISAS* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00805 1265 Pfam ABC transporter transmembrane region 701 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00805 1265 Pfam ABC transporter transmembrane region 37 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00805 1265 SUPERFAMILY ABC transporter transmembrane region 19 343 IPR036640 GO:0005524|GO:0016020
Rops11g00805 1265 CDD ABC_MTABC3_MDL1_MDL2 1022 1258 - -
Rops11g00805 1265 SMART AAA_5 386 572 IPR003593 GO:0016887
Rops11g00805 1265 SMART AAA_5 1049 1236 IPR003593 GO:0016887
Rops11g00805 1265 MobiDBLite consensus disorder prediction 600 619 - -
Rops11g00805 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 320 - -
Rops11g00805 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00805 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1259 IPR027417 -
Rops11g00805 1265 ProSitePatterns ABC transporters family signature. 1162 1176 IPR017871 GO:0005524|GO:0016887
Rops11g00805 1265 PANTHER ABC TRANSPORTER B FAMILY 7 599 IPR039421 -
Rops11g00805 1265 MobiDBLite consensus disorder prediction 620 647 - -
Rops11g00805 1265 FunFam ABC transporter B family member 9 24 355 - -
Rops11g00805 1265 FunFam ABC transporter B family member 1 1012 1262 - -
Rops11g00805 1265 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Rops11g00805 1265 Gene3D ABC transporter type 1, transmembrane domain 83 996 IPR036640 GO:0005524|GO:0016020
Rops11g00805 1265 FunFam ABC transporter B family member 1 349 598 - -
Rops11g00805 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 597 IPR027417 -
Rops11g00805 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Rops11g00805 1265 SUPERFAMILY ABC transporter transmembrane region 687 1003 IPR036640 GO:0005524|GO:0016020
Rops11g00805 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1259 IPR003439 GO:0005524
Rops11g00805 1265 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Rops11g00805 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 690 1005 - -
Rops11g00805 1265 MobiDBLite consensus disorder prediction 599 647 - -
Rops11g00805 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g00805 1265 FunFam ABC transporter B family member 1 680 988 - -
Rops11g00805 1265 Gene3D - 357 610 IPR027417 -
Rops11g00805 1265 Pfam ABC transporter 379 526 IPR003439 GO:0005524
Rops11g00805 1265 Gene3D - 1012 1264 IPR027417 -
Rops11g00805 1265 Pfam ABC transporter 1041 1190 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00805 Rops-Chr11 11509197 11509439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00805 12 1261 Calmodulin-binding Proteins AT2G36910 44.374 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00805 K05658 - gmx:100792531 2054.64