Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00776 ATGGTGGGCACGTACTTCTTGATATTTGCAGGCTGTGCTGCGGTGGTGGTGAACCTTAACAATGACAAAGTGGTGACACTTCCTGGAATTGCAATTGTTTGGGGACTCACAGTTATGGTATTGGTTTATTCTCTAGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATCGCTCATGCTTCCACCAAAAGGTTTCCCTTGAAGCTGGTACCAGCTTACATTATAGCTCAAATCCTTGGATCTACACTTGCAAGTGGAACTCTGAGACTTATTTTCAGTGGCAAGGATGACCATTTTATTGGAACACTACCGGCTGGTTCTGACCTGCAAGCTTTTGTTATGGAATTCATAATCACTTTCCATCTCATGTTCGTCATTTCTGGTGTAGCCACCGATAACCGAGCGATTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCAACGATCCTGCTAAATGTGTTGGTTGCCGGGCCAATTACTGGTGCATCATTGAATCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACCATGAGTTCAGAGGATTATGGATATATTTGGTGTCACCGACTCAGGGTGCTGTGGCTGGTACATGGACCTACATTTTCATCAGGTACACACACAAGCCAGTGCGTGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGTGCAGGACGTGTAAGAGCTGAGTGA 693 0.4675 MVGTYFLIFAGCAAVVVNLNNDKVVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVTIAHASTKRFPLKLVPAYIIAQILGSTLASGTLRLIFSGKDDHFIGTLPAGSDLQAFVMEFIITFHLMFVISGVATDNRAIGELAGLAVGSTILLNVLVAGPITGASLNPARSLGPAIVHHEFRGLWIYLVSPTQGAVAGTWTYIFIRYTHKPVREITKSASFLKGAGRVRAE* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00776 230 NCBIfam MIP family channel protein 2 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 SUPERFAMILY Aquaporin-like 1 215 IPR023271 -
Rops11g00776 230 CDD MIP 1 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 Gene3D Glycerol uptake facilitator protein. 1 217 IPR023271 -
Rops11g00776 230 PRINTS Major intrinsic protein family signature 116 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 PRINTS Major intrinsic protein family signature 147 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 PRINTS Major intrinsic protein family signature 71 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 PRINTS Major intrinsic protein family signature 184 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 PRINTS Major intrinsic protein family signature 34 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00776 230 PANTHER AQUAPORIN NIP2-1 1 221 IPR034294 -
Rops11g00776 230 ProSitePatterns MIP family signature. 52 60 IPR022357 -
Rops11g00776 230 Pfam Major intrinsic protein 2 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00776 Rops-Chr11 11097712 11102597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00776 1 226 Major Intrinsic Protein MIP AT5G37820 61.062 3.15e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00776 K09874 - gmx:100812577 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01158 2 16531779 16533912 Rops11g00776 11 11097712 11102597 PCT