Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00775 ATGGCTAAAAATTCAGAAAGCTACGATGTGGTTTTAAAGATAAACGGTGATGCCTCCAAAAAGTGTGACAACATCAAAGAAGACTGTGTGCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGCACGTACTTCTTGATATTTACGGGCTGTGCTGCGGTGGTGGTGAACCTTGACAACGAGAAGGTGGTAACACTTCCAGGGATTGCAATTGTTTGGGGACTCACAGTTATGGTATTGGCTTATTCTCTTGGTCACGTCTCTGGTGCTCATTTCAACCCAGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCCTTGAAGCTGGTACCAGCTTACATAATAGCTCAGGTCGTAGGATCCACACTTGCAAGTGGAACTCTCAGACTTTTATTCACCGGCAAGGATGACCATTTTGTAGGAACACTACCAACTGGTTCTAACCTGCAAGCTCTTGTGGTCGAATTCATAATCACTTTCTACCTCATGTTCGTCATTTCTGGTGTAGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCTACGGTACTACTAAATGTGTTATTTGCCGGGCCAATTACTGGAGCATCAATGAATCCCGCAAGAAGCTTAGGACCTGCAATTGTGCACAATGAGTACACAGGAATATGGATATATGTGGTAGCACCAATTGTGGGTGCTGTGGCTGCTACGTGGGTCTACACTTTCATTAGGTACACGGACAAGCCAGTGCCTGAGATCACCAACAGTGCCTCTTTCCTCAAAGGTGAAGGACGTAGGGAAAGCTGA 807 0.4659 MAKNSESYDVVLKINGDASKKCDNIKEDCVPLLQKLVAEVVGTYFLIFTGCAAVVVNLDNEKVVTLPGIAIVWGLTVMVLAYSLGHVSGAHFNPAVTIAHASTKRFPLKLVPAYIIAQVVGSTLASGTLRLLFTGKDDHFVGTLPTGSNLQALVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHNEYTGIWIYVVAPIVGAVAATWVYTFIRYTDKPVPEITNSASFLKGEGRRES* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00775 268 Pfam Major intrinsic protein 31 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 PANTHER AQUAPORIN NIP2-1 25 260 IPR034294 -
Rops11g00775 268 NCBIfam MIP family channel protein 38 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 Gene3D Glycerol uptake facilitator protein. 2 253 IPR023271 -
Rops11g00775 268 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Rops11g00775 268 CDD MIP 34 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00775 268 SUPERFAMILY Aquaporin-like 31 254 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00775 Rops-Chr11 11092209 11095259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00775 30 268 Major Intrinsic Protein MIP AT5G37820 61.088 4.75e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00775 K09874 - gmx:100786924 435.647