Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00774 ATGGCTGATAATTCAGGAAGCAACGAGGTGGTTTTGAATGTAAATGGTGATGCCTCCAAAAAGTGTGACAACATCAAAGAAGACTGTGTGCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGCACCTACTTCTTGATATTTACGGGCTGTGCTGCGGTGGTGGTAAACCTTGACAATGACAAAGTGGTGACTTTGCCTGGAATTGCACTTGTTTGGGGACTCACAGTTATGGTATTGGCTTATTCACTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTCATGCTTCCACCAAAAGGTTTCCTTTGAAGCTGGTACCAGCTTACATAATAGCTCAGGTCGTAGGATCCACACTTGCAAGTGGAACTCTCAGACTTTTATTCACTGGCAAGGATAACCATTTTGTAGGAACACTACCAACTGGTTCTAACCTGCAAGCTCTTGTGATGGAATTCATAATCACTTTCTACCTCATGTTCGTCATTTCTGGTGTAGCCACTGATAACAGAGCGATTGGTGAATTGGCTGGGCTTGCCGTTGGGTCTACGGTACTACTAAATGTGTTATTTGCCGGGCCAATCACTGGAGCATCAATGAATCCGGCAAGAAGCTTAGGACCTGCTATTGTGCACCATGAGTACACAAGAATATGGATATATGTGGTAGCACCAATTGTGGGTGCTGTGGCTGGTACATGGGTCTACACTTTCATCAGGTACACTAACAAGCCTGTGCGTGAGATCACCAAGAGTGCCTCTTTCCTCAAAGGTGAAGAGCGTAGGGGAGCTGAATGA 810 0.458 MADNSGSNEVVLNVNGDASKKCDNIKEDCVPLLQKLVAEVVGTYFLIFTGCAAVVVNLDNDKVVTLPGIALVWGLTVMVLAYSLGHISGAHFNPAVTIAHASTKRFPLKLVPAYIIAQVVGSTLASGTLRLLFTGKDNHFVGTLPTGSNLQALVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHHEYTRIWIYVVAPIVGAVAGTWVYTFIRYTNKPVREITKSASFLKGEERRGAE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00774 269 Pfam Major intrinsic protein 31 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 SUPERFAMILY Aquaporin-like 31 254 IPR023271 -
Rops11g00774 269 PANTHER AQUAPORIN NIP2-1 25 261 IPR034294 -
Rops11g00774 269 NCBIfam MIP family channel protein 38 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 Gene3D Glycerol uptake facilitator protein. 2 256 IPR023271 -
Rops11g00774 269 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Rops11g00774 269 CDD MIP 34 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops11g00774 269 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00774 Rops-Chr11 11083167 11085028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00774 30 266 Major Intrinsic Protein MIP AT5G37820 62.447 2.45e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00774 K09874 - gmx:100812577 448.358