Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00762 ATGGAGGAAGCTCAGGGTAGTTCCGGTTTAAGTTCTTTGCCTCCTTTTCTCACCAAGATTTATGAGATGGTGGATGATCCTTCCATTGATTCCATTGTTTCATGGAGTGCTACCAATAAAAGTTTCATTGTTTGGAACCCACCTGAATTTGCAAGGGATTTGTTACCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTCATCAGACAGCTCAACACTTATGGCTTTAGAAAGGTAGACCCTGAACAATGGGAATTTGCTAATGAAGATTTTGTAAGAGGTCAACCACATCTTTTGAAGAATATCCATAGGCGCAAACCAGTTCATAGCCATTCTGTGCAGAATCTCCATGGTCAAGGGGGTGCTCCATTAACAGAATCAGAAAGGCAGAGTTTGAAAGGTGAGATAGAGAAGCTTAAACATGATAAACAACAACTTCTTATGGAGTATATGAGACATGAAGATGAGTGGAAATTGTATGAGATACAATTACATTGCTGGAAGGATCATTTGGAAAGGTTGGAAAGGAAGCAACAAAATATGCTCTCTTCTGTTTCTCAAGTGCTGCAGATACCCGGGATTCCCTTAAATCTCTGGTCACTGACAGAAAACATGGATAGGAAACGAAGGTTGCCGAGAAGTGGTCACTTCACTGATGAAGCTGCCATGGAAGATCCTGTGGAAACTTCCCAAGTGTTACCTAGAGAAAATAATGAGGGTACTTCTGTTTACATGGAGCGATTGGATCAGCTAGAGTCATCCATGATCTTTTGGGAGAATATTATTCAGGATGTTGGCGACACCTCTTTTCAAAGTCATTCAAACTTGGATTTTGATGAATCTATAAGTTGTGCAGATAGTCCATCTATATCTTGTGTGCAACTAGATGTTGAAGTTCAGCCTAAGTCACCTGGAATTGACATGAACATTGAGCCAGCTATAGCTGCTGTTCCTGATCTTGTTGCATCAACTGAACAACCTGTAGTAACAGCCCCTGTGGCTACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAAAATCCTGGTTCCAATGAAACACAGGAAACAGAGTTAGAAAGAAAGGATTCTAATGGCAGAAATAATGAAGGAAAACCTGGTGACCTTGGCAGATTTTGGTGGAACATTAGGAATGTAAATAACCTTCCAGAACAGATGGGGCATTCTTAG 1194 0.4037 MEEAQGSSGLSSLPPFLTKIYEMVDDPSIDSIVSWSATNKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSVQNLHGQGGAPLTESERQSLKGEIEKLKHDKQQLLMEYMRHEDEWKLYEIQLHCWKDHLERLERKQQNMLSSVSQVLQIPGIPLNLWSLTENMDRKRRLPRSGHFTDEAAMEDPVETSQVLPRENNEGTSVYMERLDQLESSMIFWENIIQDVGDTSFQSHSNLDFDESISCADSPSISCVQLDVEVQPKSPGIDMNIEPAIAAVPDLVASTEQPVVTAPVATGVNDVFWEQFLTENPGSNETQETELERKDSNGRNNEGKPGDLGRFWWNIRNVNNLPEQMGHS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00762 397 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g00762 397 MobiDBLite consensus disorder prediction 347 378 - -
Rops11g00762 397 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g00762 397 Gene3D - 10 106 IPR036388 -
Rops11g00762 397 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Rops11g00762 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 239 IPR027725 -
Rops11g00762 397 FunFam Heat shock transcription factor 1 9 106 - -
Rops11g00762 397 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g00762 397 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g00762 397 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g00762 397 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g00762 397 MobiDBLite consensus disorder prediction 355 370 - -
Rops11g00762 397 MobiDBLite consensus disorder prediction 112 126 - -
Rops11g00762 397 MobiDBLite consensus disorder prediction 109 131 - -
Rops11g00762 397 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00762 Rops-Chr11 10938231 10940118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00762 1 396 HSF AT4G18880 52.323 3.53e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops11g00762 HSF_DNA-bind 3.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00762 K09419 - gmx:100820566 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00762 11 10938231 10940118 Rops11g00762 11 10938231 10940118 ECH
Rops11g00762 11 10938231 10940118 Rops2g01160 2 16601778 16604014 ECH
Rops2g01160 2 16601778 16604014 Rops11g00762 11 10938231 10940118 PCT