Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00760 ATGGCTTCAGGGGCAATTTTCTCGTCGTTTCGGCGAAGAAGGTCGCCGACGTTGGAAGCTTTTCTCGCCCCCGTTGACTTAAGCGACGTCGCTTTGGTTCAGACCCTTGTATCGGTGGCAAACGAGCTTGTTTCGTGTTTTTCAAAGCGTACCTTCTTCTTTCAGCAAAAGAATTCACGGTCTCTGATCAGAAAAATTGAGATTTTTCAGTTTCTTTTGGAGTATTTAAGCGATTCTGGTGGCGCGTGTCTTCCACCTACCGCGGTGCTTTGTCTTAAGGAGCTTTACCTGTTGCTGTACCGGTCCAAGATTCTTCTTGATTATTGCGATCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCGATTTCAGGTCACTTCCATGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCTATTAAGGATGTTGGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGTTGTTGCAGAAACAGTCTAGGAGGGCTAAGTTGTTTATAGATATGAAGGATGATGCTCTCAGGATTCGGTTCTTTTCTTTTCTTGATGAGTTTGAGAATGGAAGGATTCCTGATTCATCTGAATTGCAATCTTTCTATGTTGACAAGTTGAAGATTTTGGATGCTGCTAGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACATTGAGCCTACAATTTCTGTGCTTAAAGGGTTTGTGGCCATGACAAGGTATTGCAGGTTTTTGCTTTTTGGTTTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAGCCTAAGAAGAGATTGATTGCTCAGGAAATTGCTGAAACATTTTTGACTGTTCCAAAGGACTTTTGCTGCCCAATATCATTGGATTTGATGAGTGACCCTGTGATAATTTCCACAGGTCAAACTTATGATAGGCGTTCCATTTCAAGGTGGATGGAAGAAGGGCATACAACTTGCCCAAAAACAGGCCAAATGCTTGCCCACACTCGCCTTGTTCCTAATCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGCACTGCTCGTGGAATTCCCCTTGAACCACCAGAGGCGATGGATCCAATGGGTGAAGCTTTTGCATCAGCTTGTCCCACTAAAGCTGCCCTTGAAGCCAACAGAGCCACAGCAACACTTCTCATTCAACAGCTAGCTAATGGTTCACAATCTGGAAAGACTGTGGCTGCTCGGGAGATACGATTGCTAGCAAAAACTGGCAAAGAAAACCGTGCCTTCATTGCAGAAGCAGGGGCAATTCCTTATCTGCGGAACTTGCTTTCATCATCCAATGCTGTTGCTCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCCATCTTTGACAAGAACAAAAGTCGGATCATGGATGAAGAAGGGTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGACACACAACTGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAAATAATTGCAGATAAGACGGGAGCTGTTGAAGCCCTTGCAGGGCTGTTGCAAGAGGGAACTCCAAGAGGAAAGAAGGATGCTGTAACGGCCTTATTTAATCTTTCTACACACACTGAGAATTGTGTTAGAATGATAGAGGCAGGGGCAGTAACAGCTCTAGTTGGTGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCACTCGCCTTGATCGTTCGTCAGCCTATTGGAGCAAAAGCAGTAGTGAATGAGGAAGAAGCAGTAGCTGGATTGATAGGAATGATGCGTTGTGGAACACCAAGAGGGAAAGAGAATGCAGTTGCAGCATTGCTTGAGCTGTGCCGAAGTGGCGGTGCAGCTGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCTGGATTACTTCAAACACTGCTTTTTACAGGGACAAAACGGGCAAGACGAAAAGCAGCTTCACTTGCAAGAGTGTTCCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCTAGCAATTCAGCTCCAACTAGGGATACTAGCTTTGCGGGTGATGTTTCAGTACCAATGTCCATTTCTGTACCTGTTTTATAG 2151 0.4454 MASGAIFSSFRRRRSPTLEAFLAPVDLSDVALVQTLVSVANELVSCFSKRTFFFQQKNSRSLIRKIEIFQFLLEYLSDSGGACLPPTAVLCLKELYLLLYRSKILLDYCDQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVGLSKDVREQVELLQKQSRRAKLFIDMKDDALRIRFFSFLDEFENGRIPDSSELQSFYVDKLKILDAASCRTEIEALEEQIVNHEGDIEPTISVLKGFVAMTRYCRFLLFGFEEDELDLENGSQKKPKKRLIAQEIAETFLTVPKDFCCPISLDLMSDPVIISTGQTYDRRSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVQWCTARGIPLEPPEAMDPMGEAFASACPTKAALEANRATATLLIQQLANGSQSGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSSNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADKTGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPIGAKAVVNEEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAPTRDTSFAGDVSVPMSISVPVL* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00760 716 Gene3D - 513 668 IPR011989 -
Rops11g00760 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 361 IPR013083 -
Rops11g00760 716 Gene3D - 27 145 IPR036537 GO:0007166
Rops11g00760 716 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Rops11g00760 716 SMART arm_5 548 586 IPR000225 GO:0005515
Rops11g00760 716 SMART arm_5 422 462 IPR000225 GO:0005515
Rops11g00760 716 SMART arm_5 507 547 IPR000225 GO:0005515
Rops11g00760 716 Pfam U-box domain 289 358 IPR003613 GO:0004842|GO:0016567
Rops11g00760 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Rops11g00760 716 PANTHER U BOX DOMAIN-CONTAINING 56 673 - -
Rops11g00760 716 SUPERFAMILY RING/U-box 278 362 - -
Rops11g00760 716 Gene3D - 377 512 IPR011989 -
Rops11g00760 716 CDD RING-Ubox_PUB 290 342 IPR045210 -
Rops11g00760 716 FunFam RING-type E3 ubiquitin transferase 288 363 - -
Rops11g00760 716 FunFam RING-type E3 ubiquitin transferase 365 687 - -
Rops11g00760 716 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Rops11g00760 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Rops11g00760 716 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Rops11g00760 716 Coils Coil 213 233 - -
Rops11g00760 716 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00760 Rops-Chr11 10915734 10918376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00760 1 716 U-box Gene Family AT1G29340 70.748 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00760 - - gmx:100811153 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00760 11 10915734 10918376 Rops11g00760 11 10915734 10918376 ECH
Rops2g01163 2 16632107 16634924 Rops11g00760 11 10915734 10918376 PCT