Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00759 ATGACTAGGGCTATCCGCAACAGGGTACTCAAGGATGCCAATGGTGGTGATATCAGTGATCATCTACGCAACCACATCCATTTAACAAATTGTATTCACTTGAAGAACCATATGCACAAGAACAGCCCCATAATGGCTGATAGGTCAATCCTGAGGGACCTTGTTGCGCTGCAGAGATCACGCTCTCTTAGGGACCCTTCTGCAAGCCCTCCATCATGGCATTCACCTTCTGTAGTTGACTTGTTTTTGAAAAGAGCTGAAAATGATGCCATGTCTCAGGGGGGAAGAAGGTCTGTCGGTATTGAGCGTAGGAAGGAAGGGAGGAGATTGTCTGGAACCTCACCACCCTTGGTGAGTATAGGTGCCTCAAGAGTTGCTCCAGGTGAGGTTAGCAGGGGCAATGATGGGGTACCAGTGACTAGTGAACGTAGTAGTAGGAGTGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAGTGATAGGCCTGATTATTTGGATGTTAGTCAAGAGCAACCTCTCAATCAAACTGGTAAAAGTTTGGCTGAAGATGTTATTTCAAGGCATTCTGAATCTAAAGAGAGAAAGAGCAAACAAAGGGGGAAGAATGTTCGAGATGTGCAAGTTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGATATAGCGTCATCAAACATTCATTTTCGTGGAAGGTTTCCAAGACAGGAGAAAATTATTGAGGAAGCAAAAGCTGGCATGCGTGGTCATGGAAGTGGAATGAGTAGGGCAAAAAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGTTGCTACAGCATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAGCGCAGGGTTCAGCCCATCAGAAATATCATTCAGAGGAGGTTGATGAGTACGGAGATGAAAATGTTACTAGGGCTCCGAATCATGGGTGTGGTATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTAGACATTGCCGGGAGAAGTTTTTCTTGTGGTTTATCTGACTCAAGGTTAAAGAAAGGGACATTAACTGCCGATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCACTCAAGCTCATGTACTAAATCTGATGCAGAAGTGCTGCCTTTACTAGTTGATGCGTCTGGATCTCATGGAAGCACTGAAAATGCTTGTTGGGACCGTGACTATTCTGGGGAACTAGGTCTTTTTGGTGACAATTTATTCAAGCATGATATCGATTCAGACCTTGCTTCTGAAGCTAGATCTGGTGACCAGCATAAGTTGAGAGGGAATCGTCGTAGTAGACACCAAAGCTTAACACAAAAATACATGCCACGAACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTGATGAGACGGAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGTAAGAGTAGAAATATAAGGGAAGTTGGTCCTGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTCGACAATATGGTTGTTTCCCAGCTTCCATCACAATACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGACGTATTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAAGATGCAGATATTATATATACACTGCAGTTGATTTCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCTTGAAACTCATTGCATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTAGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCACTATCTGCGGACACAGTTAACACTGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTTGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAACCACTGTCCAAAGAAGACATGGAAAAGCTTCGTCAAGCTCTGAAAACTTTATCCGAAGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCATTACTTCAACTTGCTCCTGACCAACAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAGCCGTAGTCCCTTGGCTCAAAAAAAATCAGATGTTAGAGAAGCAGTTAGAATCACTGGTAATCCTGTTGAAAATCCTAACAAAGGGAGACGTTTTTCAATGGATGCTCGAATAGAAAATTCTCATGCTGGAAGCTCAGATGGGATGGCAAAGGGTCTTAATTCAGAGAAAAGAAGACTTAGTGTGTCTGGTTTTGCTCCTCAACATACTTATCCGCATGCCACCAATAAGAATAGACTGAATGAGAAGCAGATTTTGGGTAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGGTGCTTGAGAGGATTCAGGTCACTGGTCTGAAAGAGTTTTTGTATAAAGAAGGCAAGCTGATTTCTATTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACTGGCCAAATCCACTGCTGAGCAATTTACTGGTCTCATCTTGCAAGCATTTGAATCTGTCCTTGGATCTTCTATAACCATAGAAATTAGATGTGAATCAAATAAAGATGCAGGCTCAGCTGTTCAACTTCCTCTTACATTGCCTGGTATCAATGATGGTTCGTCTCAGATTAGAGACTTAAATGGTGTTGGCACTGAAGCTCATCCTTCACTAACTGATTCTGTTGCAAAGAGAAAGGGTGAAATTGTAGAAGAAGCAGCTTCTCATGTGGAGCACAGGAATAATGAGCAGCAGGTTGATGCTCATGCAACATCTTATAGAAGTCTAGAAGGTACAAGTATAGGACAAGCATCAACTTCCCAAAAAAAACCAATTGTTAAGTCACATTTAGACCGAAGAAAGCTTAGGGAGCAGAGTCAAAGTCGAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAGCGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAGGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTGTGCTGGAAAGCATCAAGAGTAACCCGTCGGAAGCTGTCGCGCTTGAAAATCCGGACCCGAAAAGCACGTGCATTACTCAACCTTGTCTCGTGTGGGAAATGTCTCTCTTCAAAATCTCCGAGCATCTATAAAAGCACCCTACTCATTACACTTCCCACACAGCAAATACTCATAGCAATAACAATTAACCCATCATTTGCATCTATCCAGAAGCAGCAAAAGCAATCTAGAACTTCCAATAAGAAGATGAAGCAAACTATCTTCTTCTCTCTCCTCCTAGTACTATTTGCTCCAGTCACTTTAGCTCAGTCACCTGCTGCAGCCCCTAAAGCCCCAGCAATACCTGCCCCAACAAAACCAGCCCCTACCTCACCAGCTCCAGCACCAGCAAAACCATTAGTCCCTTCATTACCCCAATCGCCCTCATCTGATTCTTCTTCAGGTCAAGACATCATCAAAATTCTAAGGAAAGCTAAATCATTCAACACGCTAATCCGCTTGCTTAAAACCACCCAAATCATCAACCAAATCAATGCTCAGCTGGTAACTACAAAATCTGGCGGTTTAACCATTCTTGCTCCAGATGATGGTGCCTTTTCACAACTCAAAGCTGGCTTCTTCAACTCTCTTGGTGAGCGCCAACAGAAAGAACTTATACAGTTTCATGTTCTTCCAGCTTATGTCTCAAGCTCAAATTTTGATTCTCTAAGTAACCCGGTGCTGACACTCGCCAGTGATAGCCCAGCTGGGTATCAAATAAATGTGACAGCTTATGGGAACAGTGTGAATATTTCAACTGGGGTGGTAAATGCCACACTCACAGGCATTGTGTACTCTGATAAGACACTTGCTATATATCATGTGGATAAGGTGCTTATTCCTTTGGATTTCTCTAAGCCTAGGCCTCCAGCTCCTGCACCCACTTTGGCAAAGGCACCTAAAGCTGATAAGGAGAATTCATCCGCAGAAGATGATGATCAAGGAGACACAACCAAGGCCACTTCTGGTGCCATCAATTTAATTGGCTTTCAAGGAACAATGTTGGTTTCTCTTGGTGTTGCTTTAGTTGCAGCTGTAATGATCTCAAGTTGA 4542 0.4269 MTRAIRNRVLKDANGGDISDHLRNHIHLTNCIHLKNHMHKNSPIMADRSILRDLVALQRSRSLRDPSASPPSWHSPSVVDLFLKRAENDAMSQGGRRSVGIERRKEGRRLSGTSPPLVSIGASRVAPGEVSRGNDGVPVTSERSSRSGMGDGRRVGREESGRKSDRPDYLDVSQEQPLNQTGKSLAEDVISRHSESKERKSKQRGKNVRDVQVKTLSEQLNDVPLDSDDIASSNIHFRGRFPRQEKIIEEAKAGMRGHGSGMSRAKRRKFRSARRARVATASRDIGAENELSVASNSLAQGSAHQKYHSEEVDEYGDENVTRAPNHGCGIPWNWSRIHHRGKTFLDIAGRSFSCGLSDSRLKKGTLTADGRNISEMPVASEHSSSCTKSDAEVLPLLVDASGSHGSTENACWDRDYSGELGLFGDNLFKHDIDSDLASEARSGDQHKLRGNRRSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFESIMDLLDNMVVSQLPSQYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQLISTKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFSRSPLAQKKSDVREAVRITGNPVENPNKGRRFSMDARIENSHAGSSDGMAKGLNSEKRRLSVSGFAPQHTYPHATNKNRLNEKQILGKNRKEIEEIWLEVLERIQVTGLKEFLYKEGKLISISFGAAPTVQLMFSSQLAKSTAEQFTGLILQAFESVLGSSITIEIRCESNKDAGSAVQLPLTLPGINDGSSQIRDLNGVGTEAHPSLTDSVAKRKGEIVEEAASHVEHRNNEQQVDAHATSYRSLEGTSIGQASTSQKKPIVKSHLDRRKLREQSQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRTRKARALLNLVSCGKCLSSKSPSIYKSTLLITLPTQQILIAITINPSFASIQKQQKQSRTSNKKMKQTIFFSLLLVLFAPVTLAQSPAAAPKAPAIPAPTKPAPTSPAPAPAKPLVPSLPQSPSSDSSSGQDIIKILRKAKSFNTLIRLLKTTQIINQINAQLVTTKSGGLTILAPDDGAFSQLKAGFFNSLGERQQKELIQFHVLPAYVSSSNFDSLSNPVLTLASDSPAGYQINVTAYGNSVNISTGVVNATLTGIVYSDKTLAIYHVDKVLIPLDFSKPRPPAPAPTLAKAPKADKENSSAEDDDQGDTTKATSGAINLIGFQGTMLVSLGVALVAAVMISS* 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00759 1513 CDD HLD_clamp_pol_III_gamma_tau 631 694 IPR045085 -
Rops11g00759 1513 SMART AAA_5 490 631 IPR003593 GO:0016887
Rops11g00759 1513 FunFam Fasciclin-like arabinogalactan protein 11 1286 1444 - -
Rops11g00759 1513 Pfam DNA polymerase III, delta subunit 474 631 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 254 273 - -
Rops11g00759 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 678 IPR027417 -
Rops11g00759 1513 FunFam DNA polymerase III subunit gamma/tau 632 694 - -
Rops11g00759 1513 SMART fasc_3 1340 1445 IPR000782 -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 147 170 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 89 210 - -
Rops11g00759 1513 Gene3D FAS1 domain 1285 1444 IPR036378 -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 188 210 - -
Rops11g00759 1513 Pfam DNA polymerase III subunits gamma and tau domain III 687 805 IPR022754 GO:0003887
Rops11g00759 1513 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 460 883 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 439 458 - -
Rops11g00759 1513 Gene3D - 449 628 IPR027417 -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 1260 1286 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 1453 1481 - -
Rops11g00759 1513 Coils Coil 767 794 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 1466 1480 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 173 187 - -
Rops11g00759 1513 ProSiteProfiles FAS1/BIgH3 domain profile. 1298 1442 IPR000782 -
Rops11g00759 1513 Pfam Fasciclin domain 1310 1444 IPR000782 -
Rops11g00759 1513 NCBIfam DNA polymerase III subunit gamma/tau 457 805 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Rops11g00759 1513 MobiDBLite consensus disorder prediction 1069 1100 - -
Rops11g00759 1513 MobiDBLite consensus disorder prediction 1259 1298 - -
Rops11g00759 1513 FunFam DNA polymerase III subunit gamma/tau 453 630 - -
Rops11g00759 1513 Gene3D - 632 694 - -
Rops11g00759 1513 SUPERFAMILY post-AAA+ oligomerization domain-like 702 805 IPR008921 GO:0003677|GO:0006260
Rops11g00759 1513 SUPERFAMILY FAS1 domain 1304 1445 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00759 Rops-Chr11 10893054 10904047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00759 457 755 Core DNA Replication Machinery Family AT1G21690 23.920 2.88e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00759 - - gmx:100809005 2009.19