Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00752 ATGGGAGCAGATAGTGATGGAATCCGTAGCAGAAAGAAATCATCAAGAGGACACCACAGGTTTGTAGGTGTTCGACAAAGGCCATCAGGGAGATGGGTAGCAGAGATTAAGGACTCTCTACAGAAGGTTAGGCTTTGGTTAGGGACATTTGACACTGCTGAAGAAGCTGCTCGTGCATATGACACTGCTGCTAGAGCTTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCAGAATCTGCAACCTCTGGTGGTGCTACTAAGCGTGGTAATGGTTCCAATTTCATTCCTGATAATACTGAGCCCTTTTCTTTTGAGGATGTGAGTGAGTCAGTGGCTGATTCTGACGGCCTTCTTGGTGCACTTAAGGCCAAACTGTTTGATGGAAAGGAAGGGAAGTTTCCATTTCCATTTCCATTTCCTGCTAATTGTGCAGTCCCGGTTGTTCAATCTGGCATGGTTTCAAGATCAACTCAGAAATGTTTTGGGGAGAAAGATTTTTCATCAGTTATTTCCCTAACAAGGATGAATGGAACTGTCAACACTATGCCTGGTTTGTTGAGTACTTCATCAAACACTTCTGCTAAGAGAGTGCTTATCCCAAATCATGATCATGAAGGTGTTGTAGCAAGCAGTGCTGGAGTCAACTCTCATCATCTTTGTCAAACCCCACCTGTGACAACCATGACATGGTCCAATGAAATGGCATATGAGTTGCCTTGGCCTACACAGATGAGCCAAGTTCCTGACAATAGCCTGCTTGCCTCTGCAAGTGCAGCCACTTTTCCATGGCAATTTTCTGGGGTAATTGAGCCCACTGTTGATATGACATGTACAGATCAGGGGCCATCAAATAGAAACAAGAGTGGCCAAACGAATATGATGAGCATGCAATTACCTATAGTTGGTGGAGCAACTGAAGGCTTTTGGACAATGGAGCAGCAACAATTGGTGCAATATGATAACAACAGTTGGTTTGGTTCTAGTGGCTCTTGGGATCCTCTCCTCTATGTGCCTTCTGAGCTAGCTTGA 1035 0.4473 MGADSDGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFELPESATSGGATKRGNGSNFIPDNTEPFSFEDVSESVADSDGLLGALKAKLFDGKEGKFPFPFPFPANCAVPVVQSGMVSRSTQKCFGEKDFSSVISLTRMNGTVNTMPGLLSTSSNTSAKRVLIPNHDHEGVVASSAGVNSHHLCQTPPVTTMTWSNEMAYELPWPTQMSQVPDNSLLASASAATFPWQFSGVIEPTVDMTCTDQGPSNRNKSGQTNMMSMQLPIVGGATEGFWTMEQQQLVQYDNNSWFGSSGSWDPLLYVPSELA* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00752 344 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Rops11g00752 344 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Rops11g00752 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 97 - -
Rops11g00752 344 SUPERFAMILY DNA-binding domain 21 77 IPR016177 GO:0003677
Rops11g00752 344 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Rops11g00752 344 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Rops11g00752 344 MobiDBLite consensus disorder prediction 1 23 - -
Rops11g00752 344 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Rops11g00752 344 MobiDBLite consensus disorder prediction 76 101 - -
Rops11g00752 344 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Rops11g00752 344 FunFam ethylene-responsive transcription factor RAP2-11 19 78 - -
Rops11g00752 344 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00752 Rops-Chr11 10756560 10757594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00752 9 76 AP2-EREBP Transcription Factor Family AT5G19790 69.118 2.75e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops11g00752 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00752 - - gmx:102661478 442.195