Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00742 ATGAGTCGAAGAAACATCACCACCGATGAATTTGCGCTTCTTGCGTTCAAATCCTCCATAACTGTAGACCCCTATCATATGATCAGTAATTGGTCAGCCTCCTCCTCCTCTTCTTCTTTGTGCAATTGGGTTGGTGTCACTTGTGATTGGCGCCATGGAAGAGTAAAGGCTTTGAATCTGAGTAACATGGGCCTTAGAGGTACCATTTCCTCACAACTGGGGAATCTCTCCTTCCTTGTTGAGCTTGACCTCCATGGCAATGCCTTCTATGGTCAGTTGCCACAAGAGTTATTTGGGTTGCACCGACTGAAGTTGCTTGACTTGAGCAACAACGAGCTTGTTGGAGGAATCCCTGCGAGGGTAGGGGACTTATCAAGACTTCAACATTTGAATCTTGGCCTTAATAATCTTGCTGGTTTTATCCCACACTCTATGTTCAACTTGTCAAAGTTGGAGCTCCTAAATTGCTCATTCAATTTCATCAAAGGGACCATTCCACCTGTGATTGGTCAGCTTCGTCAGTTGAAGATTTTGGATATTACAAATAACACGCTGTCGGGAACCATACCACTAACAATTTCCAACCTGTCTTCACTTGAAGAAATCCATTTATCTCTTAACTCCTTATCAGGAGGAATTCCGAAAGGGATTGGTGATCTTACACAACTAAGAAGATTGCACCTTCGAAATAATCAGCTTTCAGGCCATATATCATCCACAATATTCAACAACTCATTGTTGCAATATTTTGTTCTTGATAACAATAATCTATCGGGTGATCTTCCATCAAATATTTGCCAAGGACTTCCCAAACTTAAATTCCTTTATCTTCCCTACAATGATCTTTCTGGTAAGATACCGACTCTTTGGCATCAATGCAAAGAGTTGGTAGAGTTAGTACTATCCGTCAATAATTTCGACAAAGGACGTCTGCCAGCCGACATCGGAAACTTGACCAAGCTTCAATCTTTATATCTTGACGGCAACAACTTGGAAGGTGAAATCCCAGTCTCCCTTTTAAATATCTCTTCTTTGAGGGTGGTCAGCCTTGAAGAAAACAATTTAAATGGAAGTGTCCCGCAGGAGATGTGTCATCAGCTTCCTCAACTTCAAATCTTTAGTTTACGGACTAATCAAATTGAAGGAAGCATTCCAAGATCAATTGGCAACTGCACATCACTTAAAGAGTTATACTTAGGGAACAACTATCTGACAGGTTCAATACCCACAGAGATTGGTGATCTACGTCAACTTGAGATGGTATCATTGGGATTTAACAACTTGAGTGGACCTATTCCTTCAAAACTCCTCAACATTTCAACATTGACACACTTGCATATTGGAAACAATTCTCTCTCAGGCATTCTTCCATCAGACATGGGATATGGCCTTCCTAACCTGGAAGAACTCCACTTGTATACAAATAAACTTGTTGGAAACATTCCAAATGGTATATCCAATGCTTCTAAACTCATTAACCTCGACTTAAGTGGCAATGAATTCAACGGAATCATACCCAACGTATTTGGAGATTTAACAGTCCTCAAATTTCTCGGTATAAGAGACAATAATTTGACACTTGAATTCAACTTTCTTACTTCACTGACAAAATGCAGACATTTGACAGATATGGATGTATCAAAGAATAAGTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCCAAGTCTCTAGAATATTTCTGGGCAGATTCTTGTAGAATTTATGGCAATATTCCACTGGAAATAGGAAACATAAGCAACTTGATAGCTTTATCTTTGCTTGATAATGATATAAATGGACAAATGCCTGGGACAATCAAAGGGTTACAGAAACTTCAGTATTTGGATCTTGGCTACAATGGACTGCAAGGTTCCATCGTTGATGAGTTGTGTGAAATTAGAAGTTTGAGTGAGTTGTATCTATCAAACAATAAGCTTTCTGGAGTGTTACCAACATGCTTAGGAAATATGACTTCTCTTAGAAAGGTGTACATAGGATCTAACAAATTGATCTCTAGGGTACCTTTTTCTTTTTGGAGTCTCAAAGATATCTTAGAGGTAAACTTATCCTCCAATGCTTTAATTGGAAATATTCCACCTGAGATTGGGCAATTGAGAGCTCTTATTCTACTAGATTTATCAAGAAATCAGATTTCAAGCAACATTCCTGTAACCATTAGTTTCTTGAAAACATTGCAAACTCTCTCCTTAGCGCATAACAAATTGCAAGGGTCTATTCCTAAATCACTTGGCGAAATGGTATGCTTGAGCTTCTTGGATTTATCCCAAAATCTTTTGTCTGGTGGGATTCCAAAATCCTTAGAGTCACTTGCCTATCTTAAATACATCAACTTTTCATACAATAGATTACAAGGAGAGATTCCCAATGGAGGACCTTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCTCACCTACAAGTGCCTCCATGTGGTAAACAAGTTACGCAATGGTCAGTGACAAAGAAGCTATTAATCAAATGCATACCACCCTTAATTGTGTCAATCATTTTGATTGTTGCATGTGTAGTACTCCTACAGCGTAAAAGGAAAAAGGTTGAGAATCCACTTGAAAGGGATTTATCAACTTTAAGAGTTCCAAGAAGAATATCCTATTATGAAATTGTAAAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCTGTGTATCAAGGGATGCTCTCCAACGGGATAATGGTTGCAATTAAAGTAATTGATTTGGACTCGGAAGCATCATCAGGGAGCTTTGATGTAGAATGCAATGCAATGCGCAATCTACGACATCGAAATCTTGTTAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACCAATGGTTATACTCAAATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGACGTGGCATCTGCATTGGAATATCTCCATCACGGTTCTTTAATACCAGTGGTTCATTGCGATCTGAAGCCTAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTCAGCGATTTTGGCATTGCCAAGCTCTTAGATGAAGGACAATCTAAAACTCATACCGAGACCTTGGCTACTCTTGGCTACGTTGCACCAGAGTATGGATCGAAGGGAATTATTTCTGTCAAAGGAGATGTGTACAGTTATGGAATTATGTTAATGGAAATGTTCACAAGAAAGAAGCCAACAGATGATATGTTTGTGTCCGGAATGAGCTTGAAATATTGGATTAGTGAGTCAATGCCCAATTCAATCATGGAAGTTGTGGATTCTAATTTAGTCCAACAATATAGGGAACAAATTAATGACATATTGGCTCACATATCATCTATTTTGGAACTAGCCTTGAGTTGTTGTGTAGATTCACCCGAGGCACGAATTACCATTACAGATGTCATTATGTCATTAACCAAAATCAAGACCCAGTTCACATCCAATCTCTGA 3546 0.3835 MSRRNITTDEFALLAFKSSITVDPYHMISNWSASSSSSSLCNWVGVTCDWRHGRVKALNLSNMGLRGTISSQLGNLSFLVELDLHGNAFYGQLPQELFGLHRLKLLDLSNNELVGGIPARVGDLSRLQHLNLGLNNLAGFIPHSMFNLSKLELLNCSFNFIKGTIPPVIGQLRQLKILDITNNTLSGTIPLTISNLSSLEEIHLSLNSLSGGIPKGIGDLTQLRRLHLRNNQLSGHISSTIFNNSLLQYFVLDNNNLSGDLPSNICQGLPKLKFLYLPYNDLSGKIPTLWHQCKELVELVLSVNNFDKGRLPADIGNLTKLQSLYLDGNNLEGEIPVSLLNISSLRVVSLEENNLNGSVPQEMCHQLPQLQIFSLRTNQIEGSIPRSIGNCTSLKELYLGNNYLTGSIPTEIGDLRQLEMVSLGFNNLSGPIPSKLLNISTLTHLHIGNNSLSGILPSDMGYGLPNLEELHLYTNKLVGNIPNGISNASKLINLDLSGNEFNGIIPNVFGDLTVLKFLGIRDNNLTLEFNFLTSLTKCRHLTDMDVSKNKLLSKLPKSIGNLSKSLEYFWADSCRIYGNIPLEIGNISNLIALSLLDNDINGQMPGTIKGLQKLQYLDLGYNGLQGSIVDELCEIRSLSELYLSNNKLSGVLPTCLGNMTSLRKVYIGSNKLISRVPFSFWSLKDILEVNLSSNALIGNIPPEIGQLRALILLDLSRNQISSNIPVTISFLKTLQTLSLAHNKLQGSIPKSLGEMVCLSFLDLSQNLLSGGIPKSLESLAYLKYINFSYNRLQGEIPNGGPFKNFTAQSFMHNEALCGNPHLQVPPCGKQVTQWSVTKKLLIKCIPPLIVSIILIVACVVLLQRKRKKVENPLERDLSTLRVPRRISYYEIVKATNGFSESNLLGKGSFGSVYQGMLSNGIMVAIKVIDLDSEASSGSFDVECNAMRNLRHRNLVKIISSCSNVDFKSLVMEFMSNGSVDQWLYSNNYCLDFLQRLNIMIDVASALEYLHHGSLIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKTHTETLATLGYVAPEYGSKGIISVKGDVYSYGIMLMEMFTRKKPTDDMFVSGMSLKYWISESMPNSIMEVVDSNLVQQYREQINDILAHISSILELALSCCVDSPEARITITDVIMSLTKIKTQFTSNL* 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00742 1181 PANTHER OS04G0122200 PROTEIN 404 1177 - -
Rops11g00742 1181 FunFam Leucine-rich repeat receptor protein kinase EMS1 367 459 - -
Rops11g00742 1181 Gene3D Ribonuclease Inhibitor 307 526 IPR032675 -
Rops11g00742 1181 Gene3D Ribonuclease Inhibitor 175 306 IPR032675 -
Rops11g00742 1181 Gene3D Phosphorylase Kinase; domain 1 880 973 - -
Rops11g00742 1181 Pfam Protein kinase domain 899 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00742 1181 Gene3D Ribonuclease Inhibitor 527 834 IPR032675 -
Rops11g00742 1181 Pfam Leucine rich repeat N-terminal domain 8 49 IPR013210 -
Rops11g00742 1181 Pfam Leucine rich repeat 465 525 IPR001611 GO:0005515
Rops11g00742 1181 Pfam Leucine rich repeat 344 404 IPR001611 GO:0005515
Rops11g00742 1181 Pfam Leucine rich repeat 173 233 IPR001611 GO:0005515
Rops11g00742 1181 Pfam Leucine rich repeat 712 768 IPR001611 GO:0005515
Rops11g00742 1181 Pfam Leucine rich repeat 636 696 IPR001611 GO:0005515
Rops11g00742 1181 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 534 831 - -
Rops11g00742 1181 SUPERFAMILY L domain-like 28 355 - -
Rops11g00742 1181 SUPERFAMILY L domain-like 565 821 - -
Rops11g00742 1181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Rops11g00742 1181 ProSitePatterns Protein kinases ATP-binding region signature. 904 926 IPR017441 GO:0005524
Rops11g00742 1181 SMART LRR_sd22_2 464 496 - -
Rops11g00742 1181 SMART LRR_sd22_2 100 119 - -
Rops11g00742 1181 SMART LRR_sd22_2 172 198 - -
Rops11g00742 1181 SMART LRR_sd22_2 415 441 - -
Rops11g00742 1181 SMART LRR_sd22_2 538 564 - -
Rops11g00742 1181 SMART LRR_sd22_2 731 752 - -
Rops11g00742 1181 SMART LRR_sd22_2 755 781 - -
Rops11g00742 1181 SMART LRR_sd22_2 611 634 - -
Rops11g00742 1181 SMART LRR_sd22_2 318 344 - -
Rops11g00742 1181 FunFam Serine-threonine protein kinase plant-type 878 973 - -
Rops11g00742 1181 SUPERFAMILY L domain-like 267 532 - -
Rops11g00742 1181 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 974 1181 - -
Rops11g00742 1181 ProSiteProfiles Protein kinase domain profile. 898 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00742 1181 SUPERFAMILY Protein kinase-like (PK-like) 878 1170 IPR011009 -
Rops11g00742 1181 SMART serkin_6 898 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00742 1181 Gene3D Transferase(Phosphotransferase) domain 1 974 1180 - -
Rops11g00742 1181 SMART LRR_typ_2 635 658 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 172 196 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 464 488 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 392 415 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 318 342 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 367 391 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 489 511 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 220 244 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 731 755 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 707 730 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 124 148 IPR003591 -
Rops11g00742 1181 SMART LRR_typ_2 76 100 IPR003591 -
Rops11g00742 1181 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 6 165 - -
Rops11g00742 1181 Gene3D Ribonuclease Inhibitor 6 168 IPR032675 -
Rops11g00742 1181 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 166 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00742 Rops-Chr11 10601466 10615070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00742 558 816 Receptor kinase-like Gene Family AT3G47570 30.651 4.11e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops11g00742 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00742 - K13420 gmx:100784397 1340.87