Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00739 ATGTTACCGACTGTTTGGCATCAATGCAAAGAGTTGGACGATTTAGTACTATCCTTCAATAATTTCGACAAAGGACGTCTGCCAGCCGACATCGGAAACTTGACCAAGCTTCGATATTTATATCTTCGCAGCAACAACTTGGAAGGTGAAATCCCAGTCTCCCTTTTAAATCTCTCTTCTTTGAGGGAGGTCAGCCTTGAAGAAAACAATTTAAATGGAAGTGTCCCACAAGAGATGTGTCATCAGCTTCCTCAACTTCAAGTGTTTAGTTTAACGAGTAATCAAATTGAAGGAAGCATTCCAAGATCAATTGGCAACTGCACATCACTTAAAGAGTTAAACTTAGGGTATAACTATCTGACAGGTTCGATACCCATGGAGATTGGTGATCTTCATGAACTTGAGACAGCAGGGTTAGGAGATAACAAGTTGAGTGGATCTATTCCTTCAAAACTCCTCAACATTTCAACATTGACATCAATGTATCTTGGAATCAATTCTCTCTCAGGCATTCTTCCATCAAGCATGGGATATGGCCTTCCTAACCTGGAAGAACTATTCATGCATGAAAACAAACTTGTTGGAAACATTCCAAATGGTATATCCAATGCTTCTAAACTCATTGAACTCGACTTGAGTGGCAATGAATTCAACGGAATCATACCCAACATATTTGGAGATTTAACAGTCCTCGAATGGCTCGGTATAGAAGAAAATAATTTGACACTTGAATTCAACTTCTTTACTTCACTGACAAGCTGCAGACATTTGACACATCTGGATGTATCAAAGAATAAGTTACTATCAAAACTTCCCAAATCAATTGGAAACTTATCCAAGTCTTTAGAATATTTCAGCGCAGCTTCTTACAGAATTTATGGCAATATTCCACTAGAAATAGGAAACATAAGCAACTTGATATCTTTATCTTTGAGTGAGAATGATATAAATGGACCAATGCCTAGTACATTTAAAAAGTTGCAGAAACTACAATATTTGGGTCTTGACTTTAATGGACTGCAGGGATCCATCGTTGATGAGCTGTGTGAAATTAAAAGTTTGAGTGAGTTGTATCTAACCAACAACAAGCTTTCTGGAGAGTTGCCAACATGCTTTGGAAACATGACTTCTCTTAGAAAGGTATACTTAGGATCTAACAGATTGATCTCTGGGATACCTTCCTATTTTTGGAGTCTCAAAGATATTTTAATGCTGAACTTATCCTCCAATGCTTTAATTGGAAATCTTCCACCTGAGATTGGGCAATTGAGAGCTCTTATTCTACTAGATTTATCAAGAAATCAGATTTCAAGCAACATTCCTGCAACCATTAGTTTCTTGAAAACATTGCAAACTCTCTCCTTAGCGCATAACAAATTGCAAGGGTCTATTCCTAAATCACTTGGCGAAATGGTAAGCTTGAGCTTCTTGGATTTATCCCAAAATCTTTTGTCTGGTGGGATTCCAAAATCCTTAGAGTCACTTGCCTATCTTAAATACATCAACTTTTCATACAATAGATTACAAGGAGAGATTCCCAATGGAGGACCTTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCTCACCTACAAGTGCCTCCATGTGGTAAACAAGTTAGGCAAAGGTCAGTGACAAAGAAGCTATTAATCAAATGCATACCACCCTTAATTGTGTCAATCATTTTGATTGCTGCATGTGTAGTACTCCTACAGCGTAAAAGGAAAAAGGTTGAGAATCCACTTGAAAGGGATTTATCAACTTTAAGAGTTCCAAGAAGAATATCCTATTATGAAATTGTAAAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCTGTGTATCAAGGGATGCTCTCCAACGGGATAATGGTTGCAATTAAAGTAATTGATTTGGACTCGGAAGCATCATCAGGGAGCTTTGATGTAGAATGCAATGCAATGCGCAATCTACGACATCGAAATCTTGTTAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTGATGGATTTCATGTCAAATGGAAGTGTGGACCAATGGTTATACTCAAATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGACGTGGCATCTGCATTGGAATATCTCCATCACGGTTCTTTAATACCAGTGGTTCATTGCGATCTGAAGCCAAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTCAGCGATTTTGGCATTGCCAAACTCTTAGATGAAGGACAATCTAAAACTCATACCGAGACCTTGGCTACTCTTGGCTACGTTGCACCAGAGTATGGATCGAAGGGAATTATTTCTGTCAAAGGAGATGTGTACAGTTATGGGATTATGTTAATGGAAATGTTCGCAAGAAAGAAGCCAACAGATGATATGTTTGTGGCAGGAATGAGCTTGAAATATTGGATTAGCGAGTCAATGCCCAATTCAATCATGGAAGTTGTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTAATGACATATTGGCTCACATATCATCTATTTTGGAACTAGCCTTGAGTTGTTGTGTAGATTCACCTGAGGCACGAATCACCATTACAGATGTCATTCTGTCATTGACCAATATCAAGACCCAGTTCACATCCAATCTTTGA 2694 0.3764 MLPTVWHQCKELDDLVLSFNNFDKGRLPADIGNLTKLRYLYLRSNNLEGEIPVSLLNLSSLREVSLEENNLNGSVPQEMCHQLPQLQVFSLTSNQIEGSIPRSIGNCTSLKELNLGYNYLTGSIPMEIGDLHELETAGLGDNKLSGSIPSKLLNISTLTSMYLGINSLSGILPSSMGYGLPNLEELFMHENKLVGNIPNGISNASKLIELDLSGNEFNGIIPNIFGDLTVLEWLGIEENNLTLEFNFFTSLTSCRHLTHLDVSKNKLLSKLPKSIGNLSKSLEYFSAASYRIYGNIPLEIGNISNLISLSLSENDINGPMPSTFKKLQKLQYLGLDFNGLQGSIVDELCEIKSLSELYLTNNKLSGELPTCFGNMTSLRKVYLGSNRLISGIPSYFWSLKDILMLNLSSNALIGNLPPEIGQLRALILLDLSRNQISSNIPATISFLKTLQTLSLAHNKLQGSIPKSLGEMVSLSFLDLSQNLLSGGIPKSLESLAYLKYINFSYNRLQGEIPNGGPFKNFTAQSFMHNEALCGNPHLQVPPCGKQVRQRSVTKKLLIKCIPPLIVSIILIAACVVLLQRKRKKVENPLERDLSTLRVPRRISYYEIVKATNGFSESNLLGKGSFGSVYQGMLSNGIMVAIKVIDLDSEASSGSFDVECNAMRNLRHRNLVKIISSCSNVDFKSLVMDFMSNGSVDQWLYSNNYCLDFLQRLNIMIDVASALEYLHHGSLIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKTHTETLATLGYVAPEYGSKGIISVKGDVYSYGIMLMEMFARKKPTDDMFVAGMSLKYWISESMPNSIMEVVDSNLVQQYGEQINDILAHISSILELALSCCVDSPEARITITDVILSLTNIKTQFTSNL* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00739 897 SUPERFAMILY RNI-like 180 514 - -
Rops11g00739 897 Pfam Leucine rich repeat 60 120 IPR001611 GO:0005515
Rops11g00739 897 Pfam Leucine rich repeat 181 241 IPR001611 GO:0005515
Rops11g00739 897 Pfam Leucine rich repeat 428 484 IPR001611 GO:0005515
Rops11g00739 897 Pfam Leucine rich repeat 353 412 IPR001611 GO:0005515
Rops11g00739 897 Pfam Leucine Rich Repeat 36 58 IPR001611 GO:0005515
Rops11g00739 897 Pfam Leucine Rich repeat 253 267 IPR001611 GO:0005515
Rops11g00739 897 Gene3D Phosphorylase Kinase; domain 1 596 689 - -
Rops11g00739 897 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 690 897 - -
Rops11g00739 897 FunFam Serine-threonine protein kinase plant-type 594 689 - -
Rops11g00739 897 SUPERFAMILY RNI-like 2 243 - -
Rops11g00739 897 SMART LRR_typ_2 375 399 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 351 374 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 58 82 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 83 107 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 303 326 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 471 495 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 254 278 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 180 204 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 34 57 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 205 227 IPR003591 -
Rops11g00739 897 SMART LRR_typ_2 423 447 IPR003591 -
Rops11g00739 897 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 250 547 - -
Rops11g00739 897 ProSiteProfiles Protein kinase domain profile. 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00739 897 Pfam Protein kinase domain 615 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00739 897 PANTHER OS04G0122200 PROTEIN 120 893 - -
Rops11g00739 897 SMART LRR_sd22_2 131 157 - -
Rops11g00739 897 SMART LRR_sd22_2 83 115 - -
Rops11g00739 897 SMART LRR_sd22_2 447 468 - -
Rops11g00739 897 SMART LRR_sd22_2 254 280 - -
Rops11g00739 897 SMART LRR_sd22_2 180 212 - -
Rops11g00739 897 SMART LRR_sd22_2 34 60 - -
Rops11g00739 897 SMART LRR_sd22_2 471 497 - -
Rops11g00739 897 SMART LRR_sd22_2 375 394 - -
Rops11g00739 897 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 246 - -
Rops11g00739 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Rops11g00739 897 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Rops11g00739 897 Gene3D Ribonuclease Inhibitor 1 245 IPR032675 -
Rops11g00739 897 Gene3D Ribonuclease Inhibitor 246 551 IPR032675 -
Rops11g00739 897 SMART serkin_6 614 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00739 897 Gene3D Transferase(Phosphotransferase) domain 1 690 896 - -
Rops11g00739 897 SUPERFAMILY Protein kinase-like (PK-like) 594 886 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00739 Rops-Chr11 10464061 10475950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00739 19 893 Receptor kinase-like Gene Family AT3G47570 38.064 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops11g00739 Pkinase 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00739 - K13420 mtr:25481440 1049.27