Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00730 ATGGCTTGCTCCGCTATGAGTCGAAGAAACATCACCACCGATGAATTTGCGCTTCTTGCGTTCAAATCCTCCATTACTGTAGACCCCTATCATATGATCAGTAATTGGTCAACCTCCTCCTCTTCTTCTTCTTTGTGCAATTGGGTTGGTGTCACTTGTGATTGGCACCATGGAAGAGTGAAGGCTTTGAATCTGAGTAACATGGGCCTTAGAGGTACCATTTCCCCACAACTGGGGAATCTCTCCTTCCTTGTTGAGCTTGACCTCCATGGCAATGGCTTCCAAGGTCAGTTGCCCCAAGAGTTATTTGGGTTGCACCGACTGAAGTTGCTTGACTTGAGCAACAACGAGTTTATTGGAGGAATCTCAGCGGGGGTAGGGGACTTATCAAGACTTCAACATTTGAATCTTGGCCTTAATAATCTTGCTGGTTTTATCCCACAATCTATATACAACTTGTCAAAGTTAGAGCTCCTAAATTGCTCATACAATTTCATCAATGGGACCATTCCACCTGTGATTGGTCAACTTCGTCAGTTGAAGATTTTGGATATTACAAATAACACGCTGTCGGGAACCATACCACTAACAATTTCCAACCTGTCTTCACTTGAAGAAATCCATTTAAATGATAACTCCTTATCAGGAGGAATTCCGAAAGGGATTGGTGACCTTACACAACTAAGAAGATTGCACCTTGCATATAATCAGCTTTCAGGCCATATATCATCCACAATATTCAACAACTCATTGTTGCAATATTTTGTTCTTGCTTATAATAATCTATCCGGTGATCTTCCATCAAATATTTGCCAAGGACTTCCCAAACTTAAATTCCTTTATCTTGACTATAATGATCTTTCTGGTAAGATACCGACTGTTTGGCATCAATGCAAAGAGTTGGAAGATTTAGTACTATCCGTCAATAATTTCGACAAAGGACGTCTGCCAGCCGACATCGGAAACTTGAACAAGCTTCAATCTTTATATCTTCAAAGCAACAACTTGGAAGGAGGAATTCCGAAAGGGATTGGTGACCTTACACAACTAAGAAGATTGCACCTTGGAAGTAATCAGCTTTCAGGCCATATATCATCCACAATATTCAACAACTCATTGTTGCAATATTTTGTTCTTGCTTATAATAATCTATCCGGTGATCTTCCATCAAATATTTGCCAAGGACTTCCCAAACTTAAATTCCTTTATCTTGACTATAATGATCTTTCTGGTAAGATACCGACTGTTTGGCATCAATGCAAAGAGTTGGAAGAGTTAGTACTATCCGTCAATAATTTCGACAAAGGACGTCTGCCAGCCGACATCGGAAACTTGACCAAGCTTCAATCTTTATATCTTACCAGCAACAACTTGGAAGGTGAAATCCCAGTCTCCCTTTTAAATATCTCTTCTTTGAGGGAGGTCTGCCTTGAAAAAAACAATTTAAATGGGAGTGTCCCACAGGAGATGTGTCATCAGCTTCCTCAACTTCAAATCTTCAGCTTGCAGGCTAATCAAATTGAAGGAAGCATTCCAAGATCAATTGACAACTGCACATCACTTAAAGAGTTATACTTAGGGTTCAACTATCTGACAGGTTCAATACCCACAGAGATTGGTGATCTTCGTCAAGTTGAGATGGTGTCATTGGGATTTAACAACTTGAGTGGACCTATTCCTTCAAAACTCCTCAACATTTCAACGTTGACAATCTTGCATCTTGGAAACAATTCTCTCTCAGGCATTCTTCCATCAGACATGGGATATGGCCTTCCTAACCTGGAAGAACTCCACTTGTTTACAAATAAACTTGTTGGAAACATTCCAAATGGTATATCCAATGCTTCTAAACTCATTAAACTCGAATTGAGTGAGAATGAATTCAACAGAATCATACCCAACGTATTTGGAGATTTAACAGTGCTCAAATGGCTCAATTTAGCTGACAATAATTTGACACTTGAATTCAACTTTCTTACTTCACTGACAAGATGCAGACATTTGACACATATGGATGTATCAAAGAATAAGTTACTATCGAAACTTCCCAAATCAATTGGAAACTTATCCAAGTCTCTAGAATATTTCTGGGCAGATTCTTGTAGAATTTATGGCAATATTCCACTGGAAATAGGAAACATAAGCAACTTGATACTTTTATCTTTGAGTGGGAATGATATAAATGGACCAATGCCTAGAACATTTAAAAGGTTGCAGAAACTCCAATATTTGAGTCTTGATTACAATGGATTGCAGGGATCCATTGTCGATGAGCTTTGTGAAATTAGGAGTTTGAGTGAGTTGTATCTAACCAACAATAAACTTTCTAGAGCATTACCAACATGCTTGGGAAATATGACCAATCTTAGAAAGGTACACATAGGATCTAATGGAGTGATCTCTGGGATACCTTCCTCTTTTTGGAGTCTCAAAGATATCTTAGAGGTAAACTTATCCTCCAATGCTTTAATTGGAAATCTTCCACCTGAGATTGGGCAATTGAGAGCTCTTATTCTACTAGATTTATCAAGAAATCAGATTTCAAGCAACATTCCTGCAACCATTAGTTTCTTGAAAACATTGCAAACTCTCTCCTTAGCGCATAACAAATTGCAAGGGTCTATTCCTAAATCACTTGGCGAAATGGTAGGCTTGAGCTTCTTGGATTTATCCCAAAATGTTTTGTCTGGTGGGATTCCAAAATCCTTAGAGTCACTTACCTATCTTAAATACATCAACTTTTCATACAATAGATTACAAGGAGAGATTCCCTATGGAGGACCTTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGCAATCCTCACCTACAAGTGCCTCCATGTGGTAAACAAGTTAGGCAAAGGTCAGTGACAAAGAAGCTATTAATCAAATGCATACCACCCTTAATTGTGTCAATCATTTTGATTGCTGCATGCGTAGTACTCCTACAGCGTAAAAGGAAAAAGGTTGAGAATCCACTTGAAAGGGATTTATCAACTTTAAGAGTTCCAAGAAGAATATCCTATTATGAAATTGTAAAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCTGTGTATCAAGGGATGCTCTCCAGCGGGATAATGGTTGCAATTAAAGTAATTGATTTGGACTCGGAAGCATCATCAGGGAGCTTTGATGTAGAATGCAATACAATGCGCAATCTACGACATCGAAATCTTGTTAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTTTGGTGATGGATTTCATGTCAAATGGAAGTGTGGACCAATGGTTATACTCAAATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAATATCTCCATCACGGTTCTTTAATACCAGTGGTTCATTGCGATCTGAAGCCTAGTAATGTTTTACTGGATGAAAACATGGTTGCACATGTCAGCAATTTTGGCATTGCCAAGCTCTTAGATGAAGGACAATCTAAAACTCATACCAAGACCTTGGCTACTCTTGGCTACGTTGCACCAGAGTATGGATCGAAGGGAATTATTTCTGTCAAAGGAGATGTGTACAGTTATGGGATTATGTTAATGGAAATGTTCACAAGAAAGAAGCCAACAGATGATATGTTTGTGTCAGGAATGAGCTTGAAATATTGGATTAGTGAGTCAATGCCCAATTCAATCATGGAAGTTGTGGATTCTAATTTAGTACAACAATATGGGGAACAAATTAATGACATATTGGCTCACATATCATCTATTTTGGAACTAGCCTTGAGTTGTTGTGTAGATTCACCCGAGACACGAATTATCATTACAGATGTCATTATGTCATTAACCAAAATCAAGACCCAGTTCACATCCAATCTCTGA 3927 0.3822 MACSAMSRRNITTDEFALLAFKSSITVDPYHMISNWSTSSSSSSLCNWVGVTCDWHHGRVKALNLSNMGLRGTISPQLGNLSFLVELDLHGNGFQGQLPQELFGLHRLKLLDLSNNEFIGGISAGVGDLSRLQHLNLGLNNLAGFIPQSIYNLSKLELLNCSYNFINGTIPPVIGQLRQLKILDITNNTLSGTIPLTISNLSSLEEIHLNDNSLSGGIPKGIGDLTQLRRLHLAYNQLSGHISSTIFNNSLLQYFVLAYNNLSGDLPSNICQGLPKLKFLYLDYNDLSGKIPTVWHQCKELEDLVLSVNNFDKGRLPADIGNLNKLQSLYLQSNNLEGGIPKGIGDLTQLRRLHLGSNQLSGHISSTIFNNSLLQYFVLAYNNLSGDLPSNICQGLPKLKFLYLDYNDLSGKIPTVWHQCKELEELVLSVNNFDKGRLPADIGNLTKLQSLYLTSNNLEGEIPVSLLNISSLREVCLEKNNLNGSVPQEMCHQLPQLQIFSLQANQIEGSIPRSIDNCTSLKELYLGFNYLTGSIPTEIGDLRQVEMVSLGFNNLSGPIPSKLLNISTLTILHLGNNSLSGILPSDMGYGLPNLEELHLFTNKLVGNIPNGISNASKLIKLELSENEFNRIIPNVFGDLTVLKWLNLADNNLTLEFNFLTSLTRCRHLTHMDVSKNKLLSKLPKSIGNLSKSLEYFWADSCRIYGNIPLEIGNISNLILLSLSGNDINGPMPRTFKRLQKLQYLSLDYNGLQGSIVDELCEIRSLSELYLTNNKLSRALPTCLGNMTNLRKVHIGSNGVISGIPSSFWSLKDILEVNLSSNALIGNLPPEIGQLRALILLDLSRNQISSNIPATISFLKTLQTLSLAHNKLQGSIPKSLGEMVGLSFLDLSQNVLSGGIPKSLESLTYLKYINFSYNRLQGEIPYGGPFKNFTAQSFMHNEALCGNPHLQVPPCGKQVRQRSVTKKLLIKCIPPLIVSIILIAACVVLLQRKRKKVENPLERDLSTLRVPRRISYYEIVKATNGFSESNLLGKGSFGSVYQGMLSSGIMVAIKVIDLDSEASSGSFDVECNTMRNLRHRNLVKIISSCSNVDFKSLVMDFMSNGSVDQWLYSNNYCLDFLQRLNIMIDVASALEYLHHGSLIPVVHCDLKPSNVLLDENMVAHVSNFGIAKLLDEGQSKTHTKTLATLGYVAPEYGSKGIISVKGDVYSYGIMLMEMFTRKKPTDDMFVSGMSLKYWISESMPNSIMEVVDSNLVQQYGEQINDILAHISSILELALSCCVDSPETRIIITDVIMSLTKIKTQFTSNL* 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00730 1308 Pfam Leucine rich repeat 178 238 IPR001611 GO:0005515
Rops11g00730 1308 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Rops11g00730 1308 Pfam Leucine rich repeat 839 895 IPR001611 GO:0005515
Rops11g00730 1308 Pfam Leucine rich repeat 349 409 IPR001611 GO:0005515
Rops11g00730 1308 Pfam Leucine rich repeat 763 823 IPR001611 GO:0005515
Rops11g00730 1308 ProSiteProfiles Protein kinase domain profile. 1025 1305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00730 1308 Gene3D Ribonuclease Inhibitor 171 272 IPR032675 -
Rops11g00730 1308 Gene3D Ribonuclease Inhibitor 11 170 IPR032675 -
Rops11g00730 1308 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 11 174 - -
Rops11g00730 1308 Gene3D Transferase(Phosphotransferase) domain 1 1101 1307 - -
Rops11g00730 1308 FunFam Serine-threonine protein kinase plant-type 1005 1100 - -
Rops11g00730 1308 Gene3D Phosphorylase Kinase; domain 1 1007 1100 - -
Rops11g00730 1308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672|GO:0006468
Rops11g00730 1308 Gene3D Ribonuclease Inhibitor 273 434 IPR032675 -
Rops11g00730 1308 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 185 434 - -
Rops11g00730 1308 SMART LRR_typ_2 858 882 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 323 346 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 566 590 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 396 419 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 762 786 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 616 638 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 494 518 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 201 224 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 225 249 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 347 371 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 445 469 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 274 297 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 834 857 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 81 105 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 129 153 IPR003591 -
Rops11g00730 1308 SMART LRR_typ_2 591 615 IPR003591 -
Rops11g00730 1308 SUPERFAMILY RNI-like 589 924 - -
Rops11g00730 1308 Pfam Leucine rich repeat N-terminal domain 13 54 IPR013210 -
Rops11g00730 1308 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1101 1308 - -
Rops11g00730 1308 Pfam Protein kinase domain 1026 1293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00730 1308 SMART LRR_sd22_2 542 568 - -
Rops11g00730 1308 SMART LRR_sd22_2 882 908 - -
Rops11g00730 1308 SMART LRR_sd22_2 105 124 - -
Rops11g00730 1308 SMART LRR_sd22_2 129 155 - -
Rops11g00730 1308 SMART LRR_sd22_2 738 761 - -
Rops11g00730 1308 SMART LRR_sd22_2 323 349 - -
Rops11g00730 1308 SMART LRR_sd22_2 665 691 - -
Rops11g00730 1308 SMART LRR_sd22_2 445 471 - -
Rops11g00730 1308 SMART LRR_sd22_2 494 520 - -
Rops11g00730 1308 SMART LRR_sd22_2 858 879 - -
Rops11g00730 1308 SMART LRR_sd22_2 177 203 - -
Rops11g00730 1308 ProSitePatterns Protein kinases ATP-binding region signature. 1031 1053 IPR017441 GO:0005524
Rops11g00730 1308 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 661 958 - -
Rops11g00730 1308 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 661 1299 - -
Rops11g00730 1308 Gene3D Ribonuclease Inhibitor 657 962 IPR032675 -
Rops11g00730 1308 Gene3D Ribonuclease Inhibitor 435 656 IPR032675 -
Rops11g00730 1308 SUPERFAMILY RNI-like 315 653 - -
Rops11g00730 1308 SUPERFAMILY L domain-like 32 364 - -
Rops11g00730 1308 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 435 658 - -
Rops11g00730 1308 SMART serkin_6 1025 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00730 1308 SUPERFAMILY Protein kinase-like (PK-like) 1001 1302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00730 Rops-Chr11 10354714 10368174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00730 685 943 Receptor kinase-like Gene Family AT3G47570 29.502 2.77e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops11g00730 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00730 - K13420 mtr:25481440 1286.17