LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00715	ATGGCGGACGTGCTTTCCAAAAAGGTCACCACCACCACCACCAACAACAAGAAGGAAACATCAAATCTTTTACTGGGTCGTTTTGAGATTGGGAAGCTCCTTGGCCATGGAACCTTTGCAAAGGTTTACTATGCTAGGAACATCAAAACCGGAGAAGGGGTGGCCATAAAGGTGATTGACAAGGAGAAAATCCTAAAGGGTGGTTTGGTGGCACACATAAAACGTGAGATCTCAATCCTCCGCCGTGTGCGCCACCCCAATATTGTTCAACTCTTTGAGGTAATGGCCACAAAGGCAAAGATCTATTTTGTAATGGAATATGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAAGAGGTTGCAAGGAAGTATTTTCAACAGTTGATCTCTGCTGTTGCGTTCTGCCATGCTAGAGGTGTGTACCACAGGGATCTAAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAATCTCAAAGTTTCTGACTTTGGGTTGAGTGCTGTGTCTGATCAAATCAGACAAGATGGGTTGTTCCACACTTTTTGTGGGACTCCTGCATATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGTTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGTTATTTACCCTTTCATGACCAGAATGTTATGGCTATGTATAAGAAGATTTACAGGGGTGAGTTTAGGTGTCCAAGGTGGTTCTCACCTGACCTAGCTAAGCTCCTCACACGTCTTCTTGATACCAAGCCTGAAACAAGGATTGCTATTCCTGATATTATGGAGAATAGGTGGTTCAAGAAAGGGTTCAAACAAATTAAGTTTTATTTTGAGGATGATAGGATATGTAGTGTTGATGATAACCTCGAGGACAATGAAGATGATACAGCATCTATAACATCTGTGACTTCCTTTTCGGATTACTCAGTTTCTGAGTCTGATTCTGAGATAGAAACTAGAAGGAAGAATGCTCCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATCATATCATTCTCTCCAGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAGGGGGATGAGGCAAGGTTTGTGACTGCTGCCCCAGTTTCAAAGATCATATCAAAATTGGAGGAAATTGGTCAGTTGGTTAGATTCACTGTAAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGTACTAGAGAAGGTGTGAAGGGGCCATTGACTATTGCTGCAGAGGTATTTGAGTTGACACCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAGTGCTGAATATGAGAGATTTTGTAACAATGAACTGAAACCTGGGCTGGAGAATTTGATGGAGGATGAATCTGCAACTTCTTCAACTGTGTCCACACCTACTGAGCATTCCCTGCTACGTGTGCTTTCTGAACCCTCCCGCAGCATAGCTCCAGATATTGAATCTCCACGCCATATACCTGAAGAGTGA	1518	0.4335	MADVLSKKVTTTTTNNKKETSNLLLGRFEIGKLLGHGTFAKVYYARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLAKLLTRLLDTKPETRIAIPDIMENRWFKKGFKQIKFYFEDDRICSVDDNLEDNEDDTASITSVTSFSDYSVSESDSEIETRRKNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIGQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEVFELTPSLVVVEVKKKGGDSAEYERFCNNELKPGLENLMEDESATSSTVSTPTEHSLLRVLSEPSRSIAPDIESPRHIPEE*	506

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00715	505	ProSitePatterns	Protein kinases ATP-binding region signature.	34	57	IPR017441	GO:0005524
	Rops11g00715	505	CDD	STKc_SnRK3	27	281	-	-
	Rops11g00715	505	Gene3D	Kinase associated domain 1, KA1	343	463	-	-
	Rops11g00715	505	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	17	459	-	-
	Rops11g00715	505	MobiDBLite	consensus disorder prediction	464	484	-	-
	Rops11g00715	505	SUPERFAMILY	Protein kinase-like (PK-like)	24	283	IPR011009	-
	Rops11g00715	505	CDD	CIPK_C	349	459	-	-
	Rops11g00715	505	ProSiteProfiles	NAF domain profile.	343	367	IPR018451	GO:0007165
	Rops11g00715	505	MobiDBLite	consensus disorder prediction	464	505	-	-
	Rops11g00715	505	FunFam	Non-specific serine/threonine protein kinase	18	333	-	-
	Rops11g00715	505	FunFam	Non-specific serine/threonine protein kinase	345	463	-	-
	Rops11g00715	505	SMART	serkin_6	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g00715	505	Gene3D	Transferase(Phosphotransferase) domain 1	17	340	-	-
	Rops11g00715	505	FunFam	Non-specific serine/threonine protein kinase	19	107	-	-
	Rops11g00715	505	Pfam	Protein kinase domain	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops11g00715	505	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	146	158	IPR008271	GO:0004672\|GO:0006468
	Rops11g00715	505	Pfam	NAF domain	345	401	IPR004041	GO:0007165
	Rops11g00715	505	ProSiteProfiles	Protein kinase domain profile.	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00715	Rops-Chr11	10143924	10145797	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g00715	5	466	CBL-interacting serine-threonine protein kinases	AT4G18700	78.710	0.0	754

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Rops11g00715		Pkinase	5.9e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00715	-		-	gmx:100814720	875.159