Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00710 ATGTCAGAAGGTTATGAGATTCATAACAATGAGAGGAGTGGCAGGTGTGAGGACCAGGTTGAGGAGGGAACTTCATCAGGATCTTCTCAGAAATTTTCTTCTTTTGACTTGAATGAAGAAGCTAGCAGTGAAGATAACAATGACATAACTGAGGAGAATGATAAAGCAAAGAATGAAGGCACTTCAACAAATATAAGTAGTACATCATCAAGAGATGGAAATGAGAGAAGAGGCACTATTAGACAGTATGTTAGATCCAAGATGCCTCGACTTCGGTGGACTCCTGAGCTTCATCTTTCTTTTGTGCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGCCTGGGCAAGTACTTAGCTGCCAAACATACAGGTCAATGCAAGAAGCAGGTCGTAGATCTCAGATAATGCATCAGTCCATGAGCCCTCATCACCATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAACTAATTGCAACGACCATAGTCATTTCCAAAGTAACCTCCAACCCTCCTTCACCCTATCACGTTCACATACAAACACCATGGACTCAAGGCACCAGCATTGGTACTTCAATCATCAACCTTTGAGAACACCAATATCTTCAAACCAGATTCGACCAACCCAATTTCTTGGAGAGAAAAGTTGGCTTCCATTAGAAATTATGAACAATCATCAATCAAAACCTTCCAATGTTACTGTTAAAACTTGGTCACAAGTTATTCAACCAGCTGAACGGAGCTCTGGGAACATCACAGAATATTTACCAAAATCTGATGAACCTCGCAACCATTCCAGTACTTTAAAGCTAGAATTCGATCCCCTATTTCGAAATAAGTTGAATCAAGAGAAACTGCAGAAAGAGGAGCAACAGTTGCCTGATTTGCAATTGGGTTTGAGTCACACAGATGGTGGCAAGATTGATAATTGCAGAGAAACACAAGAAATTAGCACTAAGCTATCACTTTCTTAG 1077 0.4104 MSEGYEIHNNERSGRCEDQVEEGTSSGSSQKFSSFDLNEEASSEDNNDITEENDKAKNEGTSTNISSTSSRDGNERRGTIRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEPGQVLSCQTYRSMQEAGRRSQIMHQSMSPHHHFKMGNGGIILATNCNDHSHFQSNLQPSFTLSRSHTNTMDSRHQHWYFNHQPLRTPISSNQIRPTQFLGEKSWLPLEIMNNHQSKPSNVTVKTWSQVIQPAERSSGNITEYLPKSDEPRNHSSTLKLEFDPLFRNKLNQEKLQKEEQQLPDLQLGLSHTDGGKIDNCRETQEISTKLSLS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00710 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 145 IPR017930 -
Rops11g00710 358 MobiDBLite consensus disorder prediction 59 73 - -
Rops11g00710 358 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Rops11g00710 358 Coils Coil 39 59 - -
Rops11g00710 358 FunFam Myb family transcription factor 87 145 - -
Rops11g00710 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 67 206 IPR046955 GO:0003700
Rops11g00710 358 MobiDBLite consensus disorder prediction 20 40 - -
Rops11g00710 358 Pfam Myb-like DNA-binding domain 91 141 IPR001005 -
Rops11g00710 358 Gene3D - 88 145 - -
Rops11g00710 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 144 IPR006447 GO:0003677
Rops11g00710 358 MobiDBLite consensus disorder prediction 1 83 - -
Rops11g00710 358 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00710 Rops-Chr11 10084046 10093789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00710 80 209 G2-like Transcription Factor Family AT2G42660 50.376 6.59e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops11g00710 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00710 - - gmx:102669757 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00710 11 10084046 10093789 Rops11g00710 11 10084046 10093789 ECH
Rops11g00710 11 10084046 10093789 Rops2g01204 2 17282492 17293206 ECH
Rops2g01204 2 17282492 17293206 Rops11g00710 11 10084046 10093789 PCT