Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00685 ATGTCAACCCCTTCATCATCATCATCATCTTCTTCTTCTTCTATTTGGGTATTGTCTAACGTAAAGCTTCAGTTCTTTGCCCGTATAAGACGGTTTCTTCAATCCAAAGCAACACGAAAGCGCTGCAACCCCTGTGATCGATTTGACAAAGAAAAAAGCAGAGCTGAACAGAACATCCAGGTTGAAACTCCTGAAACAGTTCAAGTTATGGATAAGCATAAGGAGGATGAGATGGAGTCTTCAATCCTGTTGCAGAAAACTATCAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGATAGCAGCAAAGGAAATTGAAAGTTTAGCTAAAGAAGATGTCAAGGTTAGAAAGTTGATAACAGAACTTGGGGTGGTACCGGTGTTGGTATCTATGGTGGCGTCACCGGTGGCTAGCCGCCAGCGAGCAGGGTTGACGGCGTTGATCCACTTAGCTGATGGAACTTACACGAACACGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTACCTAAGACAATTGACCTTGTAGATGAATCAACAATAAGTGAGTTTGCAGAATTGCTTTTGTCATTGTCATCTCTTGCAAACACACAATTCCTTTTTGCTTCATTAGACTTTCTCCCATTACTTAAAGACATTCTTGAGAAAGGCTCAAGTTTTGATACCAAACGATCATGCTTAGGAGCCTTATACAACCTATCAACTGTGTTAGAGAATGCAGGCCCTTTGGTTTCTAGTGGTGTTGTCCCTATCCTCTTGGAACTATCCTTAGTGAAAGAAATTTCAGAGAAGGCACTTGCCACTCTTGGGAACTTGCTGGTGACTTTGATGGGAAAGAAAGCTATAGAGCACAGCTCAATGGTGCCAGAAAGTTTTATTGAGATCTTGTTATGGGATGATAAACCCAAAAGCCAAGAGTTGTCTGTTTATATTTTGATGATTCTAGCACATCAAAGCTCATTGCAAAGAGAGAAAATGGCACAGGCTGGGATTGTTCAAGTGCTTCTTGAGGTGGTTTTATTGGGGAGTCCTTTAGCTCAGAAGAGAGCACAGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACAAAGATGGGACCACATTCAGGTCCACAATCACCAAGATTTGCAATGGGTTCACCTGTAAATCAAAGAGATGTAAAAGAAGGGAAGAAATTGATGAAGAGTTTGGTGAAACAAAGCTTGCATAGGAATATGGAAATAATAACACAGAGGGCAAATGCAGCTGGGGAGTGTTCTACACTGAAGTCTTTGGTTATCAGCACAAGTTCCAAGAGTTTACCTTACTAA 1317 0.4153 MSTPSSSSSSSSSSIWVLSNVKLQFFARIRRFLQSKATRKRCNPCDRFDKEKSRAEQNIQVETPETVQVMDKHKEDEMESSILLQKTIKMLHFGSWEEKEIAAKEIESLAKEDVKVRKLITELGVVPVLVSMVASPVASRQRAGLTALIHLADGTYTNTALIVEAGILSKLPKTIDLVDESTISEFAELLLSLSSLANTQFLFASLDFLPLLKDILEKGSSFDTKRSCLGALYNLSTVLENAGPLVSSGVVPILLELSLVKEISEKALATLGNLLVTLMGKKAIEHSSMVPESFIEILLWDDKPKSQELSVYILMILAHQSSLQREKMAQAGIVQVLLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQSPRFAMGSPVNQRDVKEGKKLMKSLVKQSLHRNMEIITQRANAAGECSTLKSLVISTSSKSLPY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00685 438 Gene3D - 53 428 IPR011989 -
Rops11g00685 438 SMART arm_5 238 276 IPR000225 GO:0005515
Rops11g00685 438 SMART arm_5 155 195 IPR000225 GO:0005515
Rops11g00685 438 SMART arm_5 113 153 IPR000225 GO:0005515
Rops11g00685 438 SMART arm_5 196 237 IPR000225 GO:0005515
Rops11g00685 438 MobiDBLite consensus disorder prediction 365 386 - -
Rops11g00685 438 SUPERFAMILY ARM repeat 86 356 IPR016024 -
Rops11g00685 438 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00685 Rops-Chr11 9773624 9776735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00685 97 376 U-box Gene Family AT1G67530 31.359 8.24e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00685 - - gmx:100813828 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00685 11 9773624 9776735 Rops11g00685 11 9773624 9776735 ECH