Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00683 ATGGATTTTACGAAGAAGCGAAAAATGGAAGAAGATAATAGTGACTGCGGTTCTTCTGTGTCACCACCTTCATCAACCCTCACCCCACAAGACATCTACAACATCCTTGAGCCCTTCACCAAAGACCAGCTCCTCCACATTCTTCAATCAGCTACGCTCGCTCACCATGACGTGCTCGATGTCGTTCGATCTGTCGCCGACCTCGATGTCACCCGTCGGAGGCTCTTCATCCATGGCCTTGCTGGTGAGATCACCAACGCCGACCTTTGCGATGCATTCTCTGCCTACGGACCCATCGAAGAGATAAATGTGATCTTCAAAAAAGCCACAAGTAGGTCCAAAGGCTACGGCTTCGTGACGTTTAGGCACGTGGATGGTGCACTTAAGGCTCTGAAGGAGCCAACAAAGGTAATTGATGGCCACGAAGTTCATTGCAGGTTGGCTGATGATGGCAACAAAGGAAAACCCATGCAGCGGACACCGACTCAGGGCATTTCTGGGGATGGCATGATGATGGATCATCATCATTATCAACAACAGCAACTATCATTATTAGCATCACAGTATCATGGCCCATTGCTTGGAATGCAATCTTCTTTTGGGAATCCATATAGTTATGGTGGTTCAAAATTGAACTCTCCCTATTTCCTGCTCTTGCTTTCACTTCTCACAATCCCTTATTGCACACTGCTTCTCCACCCAAATCATGAATCCCAATTCTCAAATCTCAAAAACCTTCATCATGGAATTTGCGAAGAAGCGAAAGATCGAAGAAGACAACAACGATTGCGGTTCTTTATCCTCACCACCCCACAAGACATCCACAACATCCTCAAGCCATTCACAAAAGACCAGCTCCACAAAAATCTTAAATTCACTATGCTCGATGACCATGATGTGCTAGATGTCGTTCACTCTATCGCCGACCTTGACGTCACCCGTCAGAGGCTTTTCATTCGTGGCCTCGCCGGGAAAACCACTAACGTTGACCTTTGCGATGCCTTCTCCTCGTATGGGCCAATAGAGAAGGTAAATGTCATATTTGATAAAGCCACGAGCAGGTCCAAATGCTATAGCTTCGTGACATTCAAGCATGTGGACAGTGCAGTTACAACATTGAAGAAGCCGAACAAGAAAATTGACGGGTGA 1149 0.4656 MDFTKKRKMEEDNSDCGSSVSPPSSTLTPQDIYNILEPFTKDQLLHILQSATLAHHDVLDVVRSVADLDVTRRRLFIHGLAGEITNADLCDAFSAYGPIEEINVIFKKATSRSKGYGFVTFRHVDGALKALKEPTKVIDGHEVHCRLADDGNKGKPMQRTPTQGISGDGMMMDHHHYQQQQLSLLASQYHGPLLGMQSSFGNPYSYGGSKLNSPYFLLLLSLLTIPYCTLLLHPNHESQFSNLKNLHHGICEEAKDRRRQQRLRFFILTTPQDIHNILKPFTKDQLHKNLKFTMLDDHDVLDVVHSIADLDVTRQRLFIRGLAGKTTNVDLCDAFSSYGPIEKVNVIFDKATSRSKCYSFVTFKHVDSAVTTLKKPNKKIDG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00683 382 Gene3D - 63 182 IPR012677 -
Rops11g00683 382 SMART rrm1_1 74 146 IPR000504 GO:0003723
Rops11g00683 382 SMART rrm1_1 316 382 IPR000504 GO:0003723
Rops11g00683 382 Gene3D - 309 382 IPR012677 -
Rops11g00683 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Rops11g00683 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 380 IPR000504 GO:0003723
Rops11g00683 382 SUPERFAMILY RNA-binding domain, RBD 68 169 IPR035979 GO:0003676
Rops11g00683 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 164 IPR000504 GO:0003723
Rops11g00683 382 PANTHER GEO13361P1-RELATED 299 382 - -
Rops11g00683 382 MobiDBLite consensus disorder prediction 1 25 - -
Rops11g00683 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 382 IPR000504 GO:0003723
Rops11g00683 382 SUPERFAMILY RNA-binding domain, RBD 313 382 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00683 Rops-Chr11 9749831 9750562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00683 272 380 C2H2 Transcription Factor Family AT2G19380 34.862 1.52e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00683 K12741 - rcu:8259223 162.54