Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00664 ATGTCTCAGCAGCTTCTTGTAATGCCAGCACCACATGCAACGATGTGGCTCTTCACCCTACCGCATGCAACCTCGGCTTCTTCAAGAGCATTTTGCCACGATGTTGACTATAAGGTTCTTGTTTTCTGTACAACTGCTATGATCACAAGACTCGTTGCTGAACTTCTTGCTGAGTTGAAGTTGAATGTGAGAGGAATCCATTCAAGAAAACCTCAGAGTTATAGAACCAGAGTCTCTGAAGAAATTCGGAAGTCAAAGGGTCTCATCCTGGTTACATCAGATGCATCCGCACGTGGAGTTGACTATCCAGATGTCACTCTTGTTGTGCAGGTTGGTTTACCATATGATAGAGAACAATATATACATCGACTGGGTAGAACGGGGGGGAAGAGGAAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGAGCTCTTTCTATCTACCACAAAAGATTTGCCTATTGA 471 0.4501 MSQQLLVMPAPHATMWLFTLPHATSASSRAFCHDVDYKVLVFCTTAMITRLVAELLAELKLNVRGIHSRKPQSYRTRVSEEIRKSKGLILVTSDASARGVDYPDVTLVVQVGLPYDREQYIHRLGRTGGKRKRRAGHTATGSLGRALSIYHKRFAY* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00664 156 Pfam Helicase conserved C-terminal domain 34 128 IPR001650 -
Rops11g00664 156 SMART helicmild6 50 136 IPR001650 -
Rops11g00664 156 CDD SF2_C_DEAD 31 150 - -
Rops11g00664 156 Gene3D - 26 154 IPR027417 -
Rops11g00664 156 PANTHER RNA HELICASE 29 137 - -
Rops11g00664 156 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 27 156 IPR001650 -
Rops11g00664 156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 128 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00664 Rops-Chr11 9457497 9458127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00664 38 128 Eukaryotic Initiation Factors Gene Family AT3G19760 35.165 2.57e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00664 - - adu:107463398 162.925