Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00634 ATGGGGTCTGAAGATGAGCATGGTGAACAATCACTTGGTATAGGCCTCAAGGTCATGCTGATTGCAGCTTTCTCTTTATTTGGGGTAGTCTTGTTCACCATCTTCCTTCATTTTTGTGCAAAATATCTCATAAGACGCCAACAAAGAAGACTCCAGAACAACCTTCTTAATCAGATCAACATTCAAATTGCACCAATTGATATGAGTTCAGTGGAGGCACCAAATTCTGGCCTTGACCCTTTGATCATAGCTTCCTTGCCTAAACTCTTGTACAAGCAAATGGACCAGTTCAACCAAGGTGAAGCAATAGAGTGTTCGGTTTGCTTAGGCACTATTTTGGAAGATGCAACCATAAGGGTACTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAGTTCTAACACCACTTGCCCAATTTGCCGCACCTTGGCTGAACCCATGGTGCAACCAGGGCATGGTCATTCCCAACCCACAGCACCACCCGTGGAGGGTGGTGATGAGTCACAACAAGATGGTAATGAATTGGAGATGGTGGGTTGTTCAGGATTGAGAATTGGATCTTTTCATAGGCTGGTTAGTAGCAGGGAAAGATCATTGAGAAGAACTCAGAGTGCTGATGAGTCTGCCATAGAAAATATAGAAAGGCACTAA 669 0.429 MGSEDEHGEQSLGIGLKVMLIAAFSLFGVVLFTIFLHFCAKYLIRRQQRRLQNNLLNQINIQIAPIDMSSVEAPNSGLDPLIIASLPKLLYKQMDQFNQGEAIECSVCLGTILEDATIRVLPNCKHIFHVDCVDKWFSSNTTCPICRTLAEPMVQPGHGHSQPTAPPVEGGDESQQDGNELEMVGCSGLRIGSFHRLVSSRERSLRRTQSADESAIENIERH* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00634 222 MobiDBLite consensus disorder prediction 202 222 - -
Rops11g00634 222 Pfam Ring finger domain 104 147 IPR001841 -
Rops11g00634 222 CDD RING-H2_EL5-like 104 147 - -
Rops11g00634 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 153 - -
Rops11g00634 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Rops11g00634 222 MobiDBLite consensus disorder prediction 154 179 - -
Rops11g00634 222 SUPERFAMILY RING/U-box 89 152 - -
Rops11g00634 222 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Rops11g00634 222 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00634 Rops-Chr11 9030950 9031903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00634 10 222 C3H Transcription Factor Family AT2G42360 34.498 6.88e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00634 K19038 - gmx:100786701 305.064