Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00631 ATGAATTTTTTTGCCAAAAATTTGAACACAGTTCCAAACCTTTTGCTTTGCCTTTATCTGATAATCTCACTTCTCTTATTCCAATGTCTTATAGAAGCTCAGGCTGCCAACAGTTCCCAGAATACAAATATTGGTGTGGTCATTGATGTCAATTCTGAGATGGGAAAACAACAGGAAAGAGCTATGCAAATCGCAGCTCAAAGTTTCAATAATTATTCAAAGACTCACAACATAGTCCTTTTCTTTCATGACTCTGGTGGAAACCCATTACAAGCAGCTTCAGCTGCTGAAGTATTAATTACTAAGAACAATGTTAAAGTCATTATTGGTATGGATACATGGCAAGAAGCAGCACTAGTTGCTGACCTTGGAGCCAAAGCTCAAGTACCAGTTATTTCATTTTCTGCTCCCCCAGTTTTCCCTCCATTAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCTAAAAACCAGGCTTCACAGATGAACTGCATAGCAGATATTATCCATGCATATAACTGGCAAAATGTTATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGAATGTTAAGTCTCTTTTCTGAGGCTCTCCAAAAGGTTAACGCGCAGATTGAGTATAGATTAGTTCTTCCATCTTTCACTTCTTTATCTGATCCAAAAGGGGTTGTTCTTGATGAATTGCTAAAGCTGTTGCCACTAAAATCTCGTGTTTTTATTGTACTTCAAGCATCATTGCCTATGGTGACCCATCTGTTCAGAGAAGCTAAGAAAATTGGATTCATGGGGAATCAGTCAGCGTGGATAATCAATGAGGGGATTACAAGTATGTTAGACTCGGTACATAAATCTGTTTTATCCTCCATGGAAGGTGCTTTGGGAATCAAAACCTACTATTCTACAAGTTCTAGTGCTTATACTCAGTTGCAGGAAAATTTCCAAGCTGAGCATGGGTCTAAACCAGGATTAAATGCCTTACAAGCTTATGATAGCATTACAATCGTCATAAAGGCCTTGGAGAAAATGAATACCAATTCTAGTAGCTCAAAGGTGTTCTTGGAGGAAATGTTATCTGCCAATTTTAATGGCTTAAGTGGTAATATAAGATTCAAAGAAAGACATCTATCCTACACTCCAATATTAAGAGTCATAAACGTGGTTAATGAGAAATACATGGGATTGGACTTTTGGACCCCGAAGTTGAAGTTCTCTAGATCTCTTAAAATACTGAAAGACAGAGAGAAAAGAGGTGATCATGCTCCAAAAAGCTTAACTGGACAAGTGGTTTGGCCAGGAGGCCTAATTTCTGTTAATCCTAAGGGATGGACAGTACCTACAAATACAAATCCTTTAAAAGTTGCAATTCCTATGAATCCTGCTTTTGATAATTTTTTGAAGCAAGACCTCCAAAACCAATATAGTGGCTTTTGTATTGACCTTTTCTACATGATCAGAGAAATTCTGAGTGGCAATTATTCTAGTATGCCCTATGAATTTCACCCCTTCAATGAATCCTATGACAGACTTCTGCTCAATGTCATAGATGAGTCACATGATGTAATAGTAGGGGATGTTACAATACTCGCCGACCGATCAAAGGATGTGTCATTCACTCAACCATACACTGAGTCAGGCTTATCACTCATATTTCCAGCAGAGAATGAAGAGTCAGCATGGTTGTTTATCAAACCATTTAGCTGGGAAATGTGGATTGCAACTATTGGCATCCTCATCTACACAATGTTTATCATTTGGTTCCTGGAGCATCACTTCAATCCAGAATTTGGTGGACCATTGAAAAATCAGATCAGCACCACACTGTGGTTTGCTTTTTCTTCTCTATTTTTTGCTCATAGGGAGAACATAAACAGGAATTCTGCTCGAGTAGTAGTTGGCGTATGGTTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCCAACCTTTCTTCAATGCTTACTGTTAAAGGATTGAAGTCTGGAAGAGATATTGAGTGGCTTATACAAAACAACCTACCAGTTGGTTGTGATAACAGCAGTACCTTTGTAAAGAGCTACTTGATCAACGTGTATAATTTCCATCCTCAGCAAGTAATAGAGGTTGATGGAGAAGATGACATTGTAGATAAATTCAAGAGCAAAAGAATTTATGCTCTCTTTCTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAGTACTGCAATGATTACACTGCAATTACAGCAGCATATAAATTTGGAGGAATGGGATTTGTATTCCAAAAAGGGTCTCCCATGGCTAAGGACTTTTCTGAAGCAATTTTAACACTGGCAGAAAATGGAAAACTAAAACAATTGGAAGAGCAATGGTTGACCCCTTCCAAGGAATGCTCAAACAACTCAAAGTCTTCAGAAACTGAGAGCCTGACCCTTGACAAATTTTGGGGTCTCTATATCATATGTGCTGCCACTTCCACCATATGCTTAGTGCTGGGTTTACTGAAGAATTACCTTCATAAACATAACCACTATAGTCATGAAGAGGGAACTCAACTACAAGACAATGTAACAGCTGCTGATGATAACAATGTTTGGAAGAAGGCATTTAGAATCAGTAGAGGCTTTTACAATGGGAATCTCAAAACTATGGATAGAGCTGCAACTTTTGGTGGAAGTGGAGTACAGAATGTACGTTTTAGGAACTCCTCAAAGTGGAAGAGTATAAGCACTTCTGATAATTTGGGCAATCCGCGTCGTTCTCATTCAGCTGTCATAGAAATGTTGTAG 2772 0.3838 MNFFAKNLNTVPNLLLCLYLIISLLLFQCLIEAQAANSSQNTNIGVVIDVNSEMGKQQERAMQIAAQSFNNYSKTHNIVLFFHDSGGNPLQAASAAEVLITKNNVKVIIGMDTWQEAALVADLGAKAQVPVISFSAPPVFPPLMQLRWPFLIQMAKNQASQMNCIADIIHAYNWQNVIAIYEDNPYSGDSGMLSLFSEALQKVNAQIEYRLVLPSFTSLSDPKGVVLDELLKLLPLKSRVFIVLQASLPMVTHLFREAKKIGFMGNQSAWIINEGITSMLDSVHKSVLSSMEGALGIKTYYSTSSSAYTQLQENFQAEHGSKPGLNALQAYDSITIVIKALEKMNTNSSSSKVFLEEMLSANFNGLSGNIRFKERHLSYTPILRVINVVNEKYMGLDFWTPKLKFSRSLKILKDREKRGDHAPKSLTGQVVWPGGLISVNPKGWTVPTNTNPLKVAIPMNPAFDNFLKQDLQNQYSGFCIDLFYMIREILSGNYSSMPYEFHPFNESYDRLLLNVIDESHDVIVGDVTILADRSKDVSFTQPYTESGLSLIFPAENEESAWLFIKPFSWEMWIATIGILIYTMFIIWFLEHHFNPEFGGPLKNQISTTLWFAFSSLFFAHRENINRNSARVVVGVWLFLVFVLTSSYTANLSSMLTVKGLKSGRDIEWLIQNNLPVGCDNSSTFVKSYLINVYNFHPQQVIEVDGEDDIVDKFKSKRIYALFLESPYEKVFLNKYCNDYTAITAAYKFGGMGFVFQKGSPMAKDFSEAILTLAENGKLKQLEEQWLTPSKECSNNSKSSETESLTLDKFWGLYIICAATSTICLVLGLLKNYLHKHNHYSHEEGTQLQDNVTAADDNNVWKKAFRISRGFYNGNLKTMDRAATFGGSGVQNVRFRNSSKWKSISTSDNLGNPRRSHSAVIEML* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00631 923 Pfam Receptor family ligand binding region 58 388 IPR001828 -
Rops11g00631 923 FunFam Glutamate receptor 560 690 - -
Rops11g00631 923 Pfam Ligand-gated ion channel 788 818 IPR001320 GO:0015276|GO:0016020
Rops11g00631 923 Gene3D - 157 394 - -
Rops11g00631 923 Gene3D - 560 688 - -
Rops11g00631 923 Pfam Bacterial extracellular solute-binding proteins, family 3 469 787 IPR001638 -
Rops11g00631 923 Gene3D - 447 559 - -
Rops11g00631 923 FunFam Glutamate receptor 161 324 - -
Rops11g00631 923 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 848 IPR015683 -
Rops11g00631 923 SMART GluR_14 452 788 IPR001320 GO:0015276|GO:0016020
Rops11g00631 923 CDD PBP1_GABAb_receptor_plant 43 409 IPR044440 -
Rops11g00631 923 SUPERFAMILY Periplasmic binding protein-like I 38 444 IPR028082 -
Rops11g00631 923 SUPERFAMILY Periplasmic binding protein-like II 431 787 - -
Rops11g00631 923 PIRSF IGluLR_plant 12 916 IPR017103 -
Rops11g00631 923 Gene3D - 51 380 - -
Rops11g00631 923 Gene3D - 730 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00631 Rops-Chr11 9000446 9004700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00631 19 838 Ion Channels AT2G29120 32.439 3.31e-134 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00631 - - gmx:100818078 1359.36