Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00630 ATGATTAACAAGCAAAAGGTGCAAGTGATTATAGGGATGCAAACATGGCCAGAAGCAGCTCTAGTGGCTGAAAAAGGAAGCCAAGCTCAAGTTCCCACCATATCCTTTGCAGAACCTACCATTACCCCACCATTGATGACAGTTCGTTGGCCTTTTTTGGTGAGAATGGCTAACAATGGTACCGCACATATAAAATGCATTGCAGCTATAGTGCAAGCTTTTAGCTGGCAGGGAGTAGTAGCTATCTATGAAGATGATGGGTATGGTGGAGATTATGGGATGTTAGCCCTGCTATCTGAGGCCCTTCAGGAAGTGGGTTCAATGATTGAGTACCGCTTAGCTCTTCCACCAATTTCTTCTCTACATAATCCAGGAGAGCTAGTACGTGAAGAGCTGCATAAGTTAAAGCAAACACAATCTCGGGTGTTCATTGTGCTGCCGTCATCATTAGAAATGGTGATTCATTTGTTCAAAGAAGCTTCAAAAATGGGACTTGTGGATAGAGAATCAGCTTGGATAATCCCAGAGAGCGTAACTAACTTGCTGGACTCTGTCAATAAGTCTGTTATTTCCTATATGGAAGGAGCTTTAGGAATCAAGACCTACTACCCCGAAAGAAGCATTGAGTATCAAGATTTCGAGGCTCAGTTCCGGAGAACTTTTTGGTCAAAGAATCCTGAGGAAGATAACCGCTACCCAGGATTTTATGCTCTTCAAGCATATGATAGCATCAAAATTGTCACTCAAGCAGTCAACAGAATGGCCAGTAGAAACAATAGCAGCCCAAAGACTTTACTAAGAGAAATATTGTCTAGCAATTTCATTGGTTTAAGTGGTCAAATTCAATTTGAAGCTGGGCAACTCTTGCAGAATCCTATCTTAAGTATAGTAAATGTGGTTGGGAGGAGTTACAAGGAATTATGCTTTTGGACTCAACAATATGGGTTCAACACAAGCCTCCCTATAGGACAAGGTGGGAATACAAAATGTTTCAAGGGTGTACATTGGCCTGGGAATTTGCAAAGGGATCCAAAGGGATGGAATATGCCCACTAAACAAAATCCATTGAAAATTGCAGTCCGTAGCAGAACCTCATTTTCCAAGTTTGTCCACGTTAAGTATGGTCAGGATCGAAGTCCAATAAATTATAGTGGATTCTGCATTGAAATTTTTGAGCATGTGCTTGGACTTTTGGGGTATGATCTGCCGTATCACTATTATCCCATCAATGGAACATATAATGATTTGGTTCAGCTTGTCTATAACAAGACTTATGATGCTGTTGTTGGGGACATGACCATACTAGAGGAAAGATTGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCGGGATTGTCAATGATAGTTCCAGCAAAGTCTGAGGAGTCAGCATGGATGTTTACGAAGCCCTTTACCTGGGAATTGTGGATGGTTACAGGTGCAATCTTGATTTACACTATGTTAGTAGTTTGGTACCTTGAGAGAGAACCCAATCCAGAGTTTCAGGGCAATTGGAAGAGCCAGATCAGCACAGCTCTTTGGTTTACCTTCTCTTCACTGTTCTTCGCTCATAGGGAAAAAATGCATAGCAACTTAACTAGAGTGGCGATGGTCTCATGGCTCTTTCTGGTTTTGATTCTTAGCTCAAGCTACACTGCCAGTCTTTCTTCAATGCTCACAGTTAAAAAACTGCGACCAAATGTCACAGACATTCAGTGGCTGAAGAGGAACAACATGAAAATCGGTTGTGATGGTGACTCATTTGTTAGATCGTTCCTAGAGAGAGTAGAAAAGTTCAAGCCGGAGAACATCATAAACATTACTGATGAATACAAGTATGATGATGCATTTGCAAATAACAGCATAGCAGCTGCCTTTCTTGAGCTCCCATATGAAAAAGTATTCATCAGTGAATACTGCCAGAAGTACACTGGCTCCACCCCCAAAACTAGATTTGGAGGATTGGGCTTTATGTTCCAGAAAGGCTCGCCAGTGGCTCAAGACGTTTCTAAAGCTTTATTACATCTCTCAGAAAATGCAGAGCTTAAGAGATTGGAAGAAAAATGGTTGATTACCTCAAAGGATTGCTCCAACAATAAGACCTCCACCTCCAACGATATGGAAAGTTTGAAGCTTGGAAGCTTATGGGTTCTATATGTCATCTCTGTTGCCACTTCCACCATTTGCCTGCTAATATCAATCATCCAGCGTCTAAAACCAAGTCAGCAACGTGAACAAGTGCCACCAGAAGAAGGCAATGGCACCCCAAGTGATGAAAGGGTGTGGACAAAGGTGATTACATTTGCAAAACAGATTCATAGCAAAAAGGTCAATAATTCAAACGAGGGACAGGATGTAACTGATTTTTCTTCAAGATTGGATCATGTGAGCATTACTGATACCCCAGGGTATCAACAGGTAATGGCTTCACCAGTACCTGGAATCTTGATGCTGTCTTCTCTACCACCACCAGAAGTACAGATGACAACAACACATGAAGTAGGAGGAACCATGGAATCACATAGACTTCAAAATAGTTGCAGTATCAGACACTCTACAAACCCATTGTAG 2574 0.4165 MINKQKVQVIIGMQTWPEAALVAEKGSQAQVPTISFAEPTITPPLMTVRWPFLVRMANNGTAHIKCIAAIVQAFSWQGVVAIYEDDGYGGDYGMLALLSEALQEVGSMIEYRLALPPISSLHNPGELVREELHKLKQTQSRVFIVLPSSLEMVIHLFKEASKMGLVDRESAWIIPESVTNLLDSVNKSVISYMEGALGIKTYYPERSIEYQDFEAQFRRTFWSKNPEEDNRYPGFYALQAYDSIKIVTQAVNRMASRNNSSPKTLLREILSSNFIGLSGQIQFEAGQLLQNPILSIVNVVGRSYKELCFWTQQYGFNTSLPIGQGGNTKCFKGVHWPGNLQRDPKGWNMPTKQNPLKIAVRSRTSFSKFVHVKYGQDRSPINYSGFCIEIFEHVLGLLGYDLPYHYYPINGTYNDLVQLVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPAKSEESAWMFTKPFTWELWMVTGAILIYTMLVVWYLEREPNPEFQGNWKSQISTALWFTFSSLFFAHREKMHSNLTRVAMVSWLFLVLILSSSYTASLSSMLTVKKLRPNVTDIQWLKRNNMKIGCDGDSFVRSFLERVEKFKPENIINITDEYKYDDAFANNSIAAAFLELPYEKVFISEYCQKYTGSTPKTRFGGLGFMFQKGSPVAQDVSKALLHLSENAELKRLEEKWLITSKDCSNNKTSTSNDMESLKLGSLWVLYVISVATSTICLLISIIQRLKPSQQREQVPPEEGNGTPSDERVWTKVITFAKQIHSKKVNNSNEGQDVTDFSSRLDHVSITDTPGYQQVMASPVPGILMLSSLPPPEVQMTTTHEVGGTMESHRLQNSCSIRHSTNPL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00630 857 FunFam Glutamate receptor 465 603 - -
Rops11g00630 857 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 739 IPR015683 -
Rops11g00630 857 CDD PBP1_GABAb_receptor_plant 2 320 IPR044440 -
Rops11g00630 857 Pfam Ligand-gated ion channel 692 724 IPR001320 GO:0015276|GO:0016020
Rops11g00630 857 Gene3D - 623 698 - -
Rops11g00630 857 FunFam Glutamate receptor 63 231 - -
Rops11g00630 857 Pfam Bacterial extracellular solute-binding proteins, family 3 382 691 IPR001638 -
Rops11g00630 857 Gene3D - 358 464 - -
Rops11g00630 857 SUPERFAMILY Periplasmic binding protein-like I 2 347 IPR028082 -
Rops11g00630 857 Pfam Receptor family ligand binding region 4 300 IPR001828 -
Rops11g00630 857 Gene3D - 238 357 - -
Rops11g00630 857 SUPERFAMILY Periplasmic binding protein-like II 335 691 - -
Rops11g00630 857 FunFam Glutamate receptor 355 466 - -
Rops11g00630 857 Gene3D - 61 233 - -
Rops11g00630 857 CDD GluR_Plant 354 691 - -
Rops11g00630 857 PIRSF IGluLR_plant 1 802 IPR017103 -
Rops11g00630 857 Gene3D - 465 604 - -
Rops11g00630 857 SMART GluR_14 355 693 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00630 Rops-Chr11 8983137 8987421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00630 1 739 Ion Channels AT2G29120 34.241 1.80e-138 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00630 - - gmx:100818619 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00630 11 8983137 8987421 Rops11g00630 11 8983137 8987421 ECH