Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00623 ATGGATATTCATAACAATCATCAAGCAACTTCTTCTGAGGGGATTCTTGAGAATGTATGGGCTAAAATTATCAGCACTGACAGAGCAAATGATGCAGTAGAATCTTCTAACTCCTGGGAAGAACTGCCTAATCTTGATAGAAGAGATGGGTCTATGGAGATTTTGCAAAGACTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAAATGGTTTTCTACCAACTCCAAACACTACAGAAGAAGATCCTAGCAATAAAAATTTGGAACTTGGCAGTGCTAATACATCCAATAAAAAGGTAGAAGATGGCATGAAAACAGAGAAGAAGGCAACTGCAAAACACTATAGGGGAGTAAGGAGAAGGCCATGGGGTAGATATGCAGCTGAGATTAGAGACTCATCAAAGAAAGGTGCTAGAGTTTGGCTTGGTACATTTGATACAGCTGAAGAAGCAGCTTTAGCTTATGATAAGGCTGCTTTGAGAATTAGAGGTTCAAAGGCATACCTTAATTTCCCACTTGAGAGAGTCACAAACGCTTTAGGATGTGGCCACAAAGGAACTGATGTTACTACTACCTGTTCTTCTAGAACTTGTGAAGGGTATTGCTCTGCTTGCACATATATTGGGAACAAAGAAAGTATTTTCAATTCTCGGAAGAGAAGATCAAGGGAAGGGGAAGAATGTGTTGATATGATGAATGAACAACCTGCTACAAAAAAGAAGGCAGGTTTGGAAAACATGCTAGAAAATGAAGTAGACGTTCTTGTATTTCAGGACCTAGGAAGTGATTACTTGGACAATTTGCTGTCTTCTTTTTGA 840 0.3929 MDIHNNHQATSSEGILENVWAKIISTDRANDAVESSNSWEELPNLDRRDGSMEILQRLPSLGRWISMGADFWEEVLNGFLPTPNTTEEDPSNKNLELGSANTSNKKVEDGMKTEKKATAKHYRGVRRRPWGRYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGSKAYLNFPLERVTNALGCGHKGTDVTTTCSSRTCEGYCSACTYIGNKESIFNSRKRRSREGEECVDMMNEQPATKKKAGLENMLENEVDVLVFQDLGSDYLDNLLSSF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00623 279 MobiDBLite consensus disorder prediction 82 106 - -
Rops11g00623 279 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Rops11g00623 279 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Rops11g00623 279 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Rops11g00623 279 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Rops11g00623 279 PANTHER DNA-BINDING DOMAIN 94 274 IPR044808 GO:0003700|GO:0009873
Rops11g00623 279 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Rops11g00623 279 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Rops11g00623 279 FunFam Ethylene-responsive transcription factor 2 120 181 - -
Rops11g00623 279 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Rops11g00623 279 MobiDBLite consensus disorder prediction 82 117 - -
Rops11g00623 279 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00623 Rops-Chr11 8891862 8893190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00623 15 279 AP2-EREBP Transcription Factor Family AT4G18450 37.942 9.38e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops11g00623 AP2 3.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00623 - - gmx:100820226 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00623 11 8891862 8893190 Rops11g00623 11 8891862 8893190 ECH