Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00622 ATGGTTTTATTTTCCCAATCACAAACAGAATTACCCTTAAATGAGAATGACTCACAGGACATGGTCATATACCAAGTTCTAAACGAGGCAAATGCTCTTAGCAACAACACATTTGTGCCTCAGAGACACCACCAAGTCCATGGTGGCCTAGAAGCCACAAAGAACATCACAAAGAAGCACTATAGAGGGGTGAGGCGTCGTCCTTGGGGGAAATATGCAGCGGAGATTCGTGACTCAGCACGTCATGGAGCAAGGATATGGCTTGGCACGTTCCAAACAGCTGAAGAAGCTGCCATGGCTTATGATAGAGCTGCTTTCAAGATGAGGGGTGCTAAGGCTTTGCTCAATTTCCCAGCTGAAGTTGTTGCTGCAGCTTCTATTCAGATGGATTTGTCTTCTAAGAATGATTTGAATAATCATGATTCTGATTCAAGTGCTAGTAGTTCTTGCACCAATTCCACTTCAACTGGGGTTAATAGGTCTCAGTTTGAAAGCACAAGTAGCACAGATGGCTAG 516 0.4419 MVLFSQSQTELPLNENDSQDMVIYQVLNEANALSNNTFVPQRHHQVHGGLEATKNITKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEVVAAASIQMDLSSKNDLNNHDSDSSASSSCTNSTSTGVNRSQFESTSSTDG* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00622 171 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Rops11g00622 171 FunFam Ethylene-responsive transcription factor 2 59 120 - -
Rops11g00622 171 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Rops11g00622 171 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Rops11g00622 171 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Rops11g00622 171 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Rops11g00622 171 PANTHER DNA-BINDING DOMAIN 50 150 IPR044808 GO:0003700|GO:0009873
Rops11g00622 171 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
Rops11g00622 171 MobiDBLite consensus disorder prediction 135 171 - -
Rops11g00622 171 SUPERFAMILY DNA-binding domain 60 120 IPR016177 GO:0003677
Rops11g00622 171 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00622 Rops-Chr11 8886639 8887542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00622 4 121 AP2-EREBP Transcription Factor Family AT4G17500 46.207 1.73e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops11g00622 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00622 K13433 - gmx:100811533 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00622 11 8886639 8887542 Rops11g00622 11 8886639 8887542 ECH