Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00619 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCTCTCATCTCAACTGGTTGCCATAGAAGCCCTTACGCTTCAGCAGCTGGTTGTGAGGAGAGAAGTCCAGAACCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATTCGCATACTGGAAGCTATATTCAACTCTGGGATGGTGAATCCTCCAAGAGATGAGATAAGGAAGATCAGAGCACAGTTGCAAGAGTATGGTCAAGTGGGTGATGCTAATGTCTTCTATTGGTTCCAGAACCGCAAATCGAGAAGCAAGCACAAGCTTCGCCATCTCCAAAACTCAAAGAACCAAAGCCAGGAACCCCCACAAAACCCAGTTTCTCTCCCTCAAATCACTGCACCTTCATCCTCATCTTCTTCCTCTGAGAAATCTTCCCCGAAAGAACTATTACCCACCAAGGTTTTTTCCATTGGCTTCTCTAATGTCACCGATGTGGTGCCCAATTCTCCCACCGCCTCAGTGAACCAAACCTATTTTCACACTCACAATGACACCATTCTTCTCCCACCACCACCACCACAAGCAGCACCAACTGAGACTTTCTTCTTCCCAGTGCAACATCATGGGCAAGCAGTGGTACCTAACACCTTAACATCACAAGGGTTTTGCTTTTCTGAGCTCTCCAATGTTGTTCAAACTCAATCACATGGTCAACATAACGTTGGTCCTTGCACTAGTCTTTTACTTAGTGAGATCATGAACCATGGTGCTGGCTCAAAGAAATATCAAGATCAAGTTCAAGACAAGTCTGTTAAAATAATGCACCAACCCCAACAGCTTAATTTCTGTGTCTCTCCCACAACTACCGTTGTAGCTCCTACCACTACCACCACCATTACTGTTCCATCCCCTATCATTTCTCAAGTTCAAGGCACTGGAGATCCAGCTGTTCCGGCGAGATCAACGGTTTTCATTAACGATGTGGCATTCGAGATAGCGGTGGGACCTTTCAACGTGCGTGAGGCCTTTGGGGATGATGCTGTTCTCATCCATGCCACTGGTCAACCTGTGCTAACAAATCAATGGGGTGTCACACTCCAATCACTCCAGCATGGTGCATGTTATTATCTGATATAG 1164 0.4648 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYASAAGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQSQEPPQNPVSLPQITAPSSSSSSSEKSSPKELLPTKVFSIGFSNVTDVVPNSPTASVNQTYFHTHNDTILLPPPPPQAAPTETFFFPVQHHGQAVVPNTLTSQGFCFSELSNVVQTQSHGQHNVGPCTSLLLSEIMNHGAGSKKYQDQVQDKSVKIMHQPQQLNFCVSPTTTVVAPTTTTTITVPSPIISQVQGTGDPAVPARSTVFINDVAFEIAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLQSLQHGACYYLI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00619 387 SMART HOX_1 53 120 IPR001356 GO:0003677
Rops11g00619 387 MobiDBLite consensus disorder prediction 123 156 - -
Rops11g00619 387 FunFam WUSCHEL-related homeobox 11 55 122 - -
Rops11g00619 387 CDD homeodomain 54 116 IPR001356 GO:0003677
Rops11g00619 387 MobiDBLite consensus disorder prediction 114 156 - -
Rops11g00619 387 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Rops11g00619 387 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Rops11g00619 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 387 IPR044557 GO:0003700|GO:0050793
Rops11g00619 387 Gene3D - 55 121 - -
Rops11g00619 387 MobiDBLite consensus disorder prediction 42 62 - -
Rops11g00619 387 Pfam Homeodomain 55 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00619 Rops-Chr11 8852401 8854576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00619 1 387 Wox Gene Family AT2G33880 45.455 5.38e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops11g00619 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00619 - - aprc:113852083 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00619 11 8852401 8854576 Rops11g00619 11 8852401 8854576 ECH