Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00609 ATGGGGTTGATCGATCTCAACACTACAGAGGACGATGAAGGTGCTTCTTCTTCATCATCTTCCTCTCACTCGGGCATAAGCACTTCTGCTTCAGCCATGGTTCCTCCTCCTCCTCCTCCTCCACCTTCAGTGTGCTTGGAGCTATGGCACGCTTGTGCAGGACCCTTGATCTCTCTGCCTAAGAAAGGAAGTGTTGTTGTGTACTTTCCACAGGGACACTTTGAGCAAGTTCAGGATTTTCCGGTCACTGCCTATAATATCCCAACTCATGTGTTCTGTCGTGTTCTCGATGTCAAGCTACACGCAGAGGAAGGAAGCGATGAAGTGTATTGCCAAGTCATGTTGGCTCCTGATAGTGAGCAAGTGGAGCAAAACTTGCGGGAAGGGGAAATTGATGCTGATGGGGAAGAGGAGGACACTCAAGCTATGGTGAAGTCAACAACACCCCATATGTTTTGCAAGACTCTAACAGCTTCAGACACCAGCACTCATGGTGGATTCTCAGTGCCCCGTAGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAGCTTGTGGCTAAGGATTTGCATGGCCTGGAATGGAGGTTTCGCCATATATACAGGGGGCAGCCACGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTGTCTGGCGATGCCGTGTTGTTTCTTAGGGGTGATGATGGAGAACTGAGATTGGGGATTCGCAGGGCGGCTCAATTGAAAAGTGCTGGTTCCTTTGCTGCTCCCTCTGCTCAGCATTTGAATCCTGGCACTCTCATGGATGTTGTCAATGCCATATCTACTAGAAGTGCATTCAGTGTTTGCTACAATCCAAGGGTCAGTTCTTCAGAATTCATCATACCTGTCCACAAATTCTTGAAGAGCCTTGATTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGCTTTGAAACTGAAGATGCTGCTGAGAGAAGAGTCACTGGATTAATTTCTGGAATCAGTGATGTAGATCCTGTTAGATGGCCGGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCAGCAAGGCATAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCTCTTCCAATAACTTGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGGTTGACTTCAGGAAAGCCAGAATTTCCAGTTCCCGATGGGATTGGAATGTCAGACTTTAGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTTGATGGTATTAACGCTCCGAGCCCCCGGTTATATGAGCTAGGGAGGTGCTATCCTGGTTCTGGTACTGCTGCAACAGGAAATAACATACGAATACCGCAAATGACTTCTGATTTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTATTCCAAGCCCACCATTTGGAAGAGCTTTGTCTATTGACGAGGCTCGTGCCAATGGTCGCTTTGGAATCTTTGATGGTTATCAACTGCTTAGCTCCAGAAATGGGTGGTCTCCACAAATGCATGACAATTCTTCACATTGGCATGCATCTCTTGCATCTGGGCAACTGTCATCTCCATCATCTGTGTTTATGTTCCAGCAGGCAGTTAATCCAGAGAGGGAGGGTAAAGTCCGTTACCAAGGTTCATACCCAACTGAAGTGAAAGGTGGAACATTTGCACATTCCCTATCTGACAAGCCAATTCTCTCTGGAAGGGCTCAGGAGGGTACAGATTCTTTCGGTGTGCGTAATTTTCATAATCAATTGGGCAGTTCAAGGTCTCATCATGATTCAGTGCCAACACTGAGAGGAAATCAAGAGTTGGTTTCCTCGTGCAAAAGTAGCTGCAGACTCTTTGGTTTTTCATTAACTGAAGAGGATACACACATTGCAAATAAAGAGGGTGAGGCCTCTACCATCACTTGTCAATTGAATTCTGGACCTACCTTTACTAGACTTGTTGAAGATGAATTCCACCCACGCCATTCACTTAGGAGCAAGGCTGCTGGGAATAACTGCACCAAAGGTGTGTTGCAGTATTGA 2151 0.4644 MGLIDLNTTEDDEGASSSSSSSHSGISTSASAMVPPPPPPPPSVCLELWHACAGPLISLPKKGSVVVYFPQGHFEQVQDFPVTAYNIPTHVFCRVLDVKLHAEEGSDEVYCQVMLAPDSEQVEQNLREGEIDADGEEEDTQAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKSAGSFAAPSAQHLNPGTLMDVVNAISTRSAFSVCYNPRVSSSEFIIPVHKFLKSLDCSYSVGMRFRMRFETEDAAERRVTGLISGISDVDPVRWPGSKWRCLLVRWDDIEAARHNRVSPWEIEPSGSASSSNNLMAAGLKRTRIGLTSGKPEFPVPDGIGMSDFRESLRFRKVLQGQEILGVNTPFDGINAPSPRLYELGRCYPGSGTAATGNNIRIPQMTSDFSCNGIGFSESFRFQKVLQGQEIIPSPPFGRALSIDEARANGRFGIFDGYQLLSSRNGWSPQMHDNSSHWHASLASGQLSSPSSVFMFQQAVNPEREGKVRYQGSYPTEVKGGTFAHSLSDKPILSGRAQEGTDSFGVRNFHNQLGSSRSHHDSVPTLRGNQELVSSCKSSCRLFGFSLTEEDTHIANKEGEASTITCQLNSGPTFTRLVEDEFHPRHSLRSKAAGNNCTKGVLQY* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00609 716 FunFam Auxin response factor 150 254 - -
Rops11g00609 716 Gene3D - 150 254 IPR015300 -
Rops11g00609 716 CDD B3_DNA 150 252 IPR003340 GO:0003677
Rops11g00609 716 Gene3D - 315 389 - -
Rops11g00609 716 SUPERFAMILY DNA-binding pseudobarrel domain 145 259 IPR015300 -
Rops11g00609 716 FunFam Auxin response factor 315 386 - -
Rops11g00609 716 MobiDBLite consensus disorder prediction 10 31 - -
Rops11g00609 716 Coils Coil 119 139 - -
Rops11g00609 716 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Rops11g00609 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops11g00609 716 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677
Rops11g00609 716 SMART B3_2 152 254 IPR003340 GO:0003677
Rops11g00609 716 MobiDBLite consensus disorder prediction 1 40 - -
Rops11g00609 716 Pfam Auxin response factor 279 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00609 Rops-Chr11 8692260 8698162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00609 151 539 B3 DNA Binding Superfamily AT2G33860 59.744 3.33e-152 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops11g00609 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00609 K14486 - gmx:100789906 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00609 11 8692260 8698162 Rops11g00609 11 8692260 8698162 ECH