Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00600 ATGGGTGTGGACTACTATGAGATTTTGGATGTTGATAGGAATGCAACAGATGAAGAGTTAAAGAAAGCTTATAGAAAGCTTGCTATGAAATGGCACCCTGACAAGAATCCAGACAATAAGAAAGAGGCTGAGACTAAATTCAAACTTATATCTGAAGCATATGAGGTTCTAAGTGATCCCCAAAAGAGATCAATATATGATCGGTATGGAGAAGGCAGCCTTAAAAGTGGAATGCCACCACCGGATGATGGTATGGCTTCATTCTTCCAAACTGGGAATGGCCCAAGACCGTTTAGGTTTGATCCCAGAAACCCAAACAGCGTTTTTGCTGAAGTTTTTGGCTGTTCAAGCCCTTTCGGAGGAATGGGAATGGGAGTTGGAGGGTGTGGTAGAGGCATGAGGGGTGGGTCATGGGTGTCAAGGTCCTTTGGTGGAATGTTTGGCAGAGACGTATTTGGAGAAGGCAAGCCTATGAGTCAAGGACCACGACGCAAGGCACCTCCAATCGAAAATAAATTACCTTGCAGCCTTGAGGAACTCTATAAGGGGACTACAAAAAAGATGAAGATCTCGAGAGAAATTATACATGCAAGCGGGAAAACTTTTCCTGTGGAGGAAATATTAAACATTGAGATCCAACCAGGCTGGAAAAAGGGAACGAAAATCACCTTCCCAGAGAAAGGAAATGAGCAGCCAAATGTTATTGCTGCAGATATTGTGTTTATTATTGATGAAAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTCATGACACAAAAGATATCACTTGCAGAAGGTGAAACTCTAGCAGGCTACACCATCCAACTTACAACTCTAGATGGCAGAGGTCTGATAATTGCCGTAAACAATGTGATGGATCCAAACTATGAAGAAGTGATCACTGGGGAAGGTATGCCAATTTCCAAAAATCCTTCACAGAGGGGTAACCTTAGGATCAAATTCAACATCAATTTCCCAGACATGGTTGATGCGGGAGCAGAAAGCTACAATTAA 1023 0.4233 MGVDYYEILDVDRNATDEELKKAYRKLAMKWHPDKNPDNKKEAETKFKLISEAYEVLSDPQKRSIYDRYGEGSLKSGMPPPDDGMASFFQTGNGPRPFRFDPRNPNSVFAEVFGCSSPFGGMGMGVGGCGRGMRGGSWVSRSFGGMFGRDVFGEGKPMSQGPRRKAPPIENKLPCSLEELYKGTTKKMKISREIIHASGKTFPVEEILNIEIQPGWKKGTKITFPEKGNEQPNVIAADIVFIIDEKPHSVFTRDGNDLVMTQKISLAEGETLAGYTIQLTTLDGRGLIIAVNNVMDPNYEEVITGEGMPISKNPSQRGNLRIKFNINFPDMVDAGAESYN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00600 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Rops11g00600 340 CDD DnaJ_C 167 330 - -
Rops11g00600 340 SMART dnaj_3 3 62 IPR001623 -
Rops11g00600 340 CDD DnaJ 4 59 IPR001623 -
Rops11g00600 340 Pfam DnaJ C terminal domain 169 329 IPR002939 -
Rops11g00600 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 259 IPR008971 GO:0006457|GO:0051082
Rops11g00600 340 Gene3D - 168 246 - -
Rops11g00600 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Rops11g00600 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Rops11g00600 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Rops11g00600 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Rops11g00600 340 FunFam DnaJ subfamily B member 13 248 330 - -
Rops11g00600 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 332 IPR008971 GO:0006457|GO:0051082
Rops11g00600 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Rops11g00600 340 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
Rops11g00600 340 Gene3D DnaJ domain 3 122 IPR036869 -
Rops11g00600 340 FunFam Dnaj homolog subfamily b member 165 246 - -
Rops11g00600 340 Pfam DnaJ domain 4 67 IPR001623 -
Rops11g00600 340 FunFam DnaJ subfamily B member 13 3 123 - -
Rops11g00600 340 Gene3D - 248 330 - -
Rops11g00600 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00600 Rops-Chr11 8515266 8518305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00600 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 3.63e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00600 K09510 - gmx:100804763 521.546