Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00599 ATGGGTGTGGATTACTATAAGATTTTGCAGGTTGACAAGAATGCAACAGATGAAGAATTGAAGAAAGCTTACAGGAAGCTTGCTATGAAATGGCACCCTGATAAGAACCCAAACAATAAGAAAGAAGCTGAGACTAAATTCAAACAGATATCTGAAGCCTATGAGGTTCTAAGTGATCCACAGAAGAGAGCAATTTATGATCAGTATGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCTCCAGATGCTGCTGGTGGAGCTTCATTCTTCCAAGGTGGAGATGGCACAACAACGTTCAGGTTTAATCCCAGAAATGCAGATGACATCTTTGCTGAGTTTTTCGGGTTTTCAAGCCCATTTGGAGGAATGGGAGGTGGTGGTGGTGGGATGAAGGGTGGGTCAAGGTCCTTTGGTGGTGGAATTTTTGGTGATGATATATTTAGTTCATTTGGAGAAGGGAGACCCATGAGTCAGGGTCCTCGCAAGGCACCTCCAATTGAAATGACATTACCTTGCAGCCTTGAGGAACTTTATAAGGGAACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCTGATGCAAGTGGGAAAACTTTGCCCATTGAGGAAATATTGACCATTGAGATTAAACCTGGCTGGAAAAAGGGGACAAAAATAACCTTCACGGAGAAAGGAAATGAGCAGCCAAATGTTATTCCTGCAGATCTTGTGTTTATCATTGATGAAAAACCCCACGGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACAAAAGATATCACTTGCAGAAGCTCTAACAGGCTACACTGTCCATCTTACAACACTAGATGGCAGGAGCCTGACCATTCCCATAAACAATGTGATTCATCCAAACTATGAAGAGATAGTCCCAAGGGAAGGTATGCCTATTTCAAAAGACCCTTCAAAGAGGGGTAATCTGAGGATCAAATTCAACATCAAATTCCCAGCAAGGTTGACATCGGAGCAGAAAGCCGGAATCAAGAAACTTCTGGCGCCATATTAG 1029 0.4257 MGVDYYKILQVDKNATDEELKKAYRKLAMKWHPDKNPNNKKEAETKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAAGGASFFQGGDGTTTFRFNPRNADDIFAEFFGFSSPFGGMGGGGGGMKGGSRSFGGGIFGDDIFSSFGEGRPMSQGPRKAPPIEMTLPCSLEELYKGTTKKMKISREIADASGKTLPIEEILTIEIKPGWKKGTKITFTEKGNEQPNVIPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHLTTLDGRSLTIPINNVIHPNYEEIVPREGMPISKDPSKRGNLRIKFNIKFPARLTSEQKAGIKKLLAPY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00599 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Rops11g00599 342 SMART dnaj_3 3 62 IPR001623 -
Rops11g00599 342 FunFam DnaJ subfamily B member 13 3 124 - -
Rops11g00599 342 CDD DnaJ 4 59 IPR001623 -
Rops11g00599 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 339 - -
Rops11g00599 342 Gene3D - 155 244 - -
Rops11g00599 342 FunFam Dnaj homolog subfamily b member 162 243 - -
Rops11g00599 342 CDD DnaJ_C 164 327 - -
Rops11g00599 342 Pfam DnaJ C terminal domain 166 324 IPR002939 -
Rops11g00599 342 FunFam DnaJ subfamily B member 13 245 325 - -
Rops11g00599 342 Pfam DnaJ domain 4 67 IPR001623 -
Rops11g00599 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Rops11g00599 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Rops11g00599 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Rops11g00599 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Rops11g00599 342 Gene3D - 245 324 - -
Rops11g00599 342 Gene3D DnaJ domain 3 124 IPR036869 -
Rops11g00599 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Rops11g00599 342 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Rops11g00599 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 247 333 IPR008971 GO:0006457|GO:0051082
Rops11g00599 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 159 252 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00599 Rops-Chr11 8512739 8514407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00599 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 5.57e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00599 K09510 - cave:132172416 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00599 11 8512739 8514407 Rops11g00599 11 8512739 8514407 ECH