Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00596 ATGGCGCCGAGGGATAAGATGGCTGGCGTTAAGGTTAACGGCGGCGTGAAGGAGATGCATTTTCGTGGAGTAAGGAAGAGGCCATGGGGAAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGTGTTTGGCTCGGAACCTTTGACACGGCGGAAGAGGCGGCGCGTGCTTATGACGCCGCCGCACGTGAGTTCCGTGGGCCCAAGGCTAAAACCAATTTTCCTCTCCCTCCTGATAATGTCAAGAACAACCAGAGTCCTAGCCAGAGCAGCACTGTTGAATCCTCCGATCGCCACCCTGACGCCGCCGCCGTCGTTGCGGATTCAGCGCCGCTTGATCTCAACTTGGCCCCCGCCGGAGCAGGATACCCCGCCGGCGGTCGGTTCCCCTTCCAGCATCAGTTCCCGTCTCTTGACGCGATGCCGGCGGCGAATCAGTTTTTATTCTTCGATGCCGTCCTACGCGCCGGCATGGTGGGTTCTCAACGCTACGGGTTCGATTACAATCGTCCCGTGGCAGCGAGTGAGTTTCACGCGACGACAAGTGACTCTGACTCGTCGTCGGTGATCGATCTGAACCACCACGAAGGCGATGTTACTGCTAAGGTTGGCAGAGGCTTTGATCTCGATCTTAACCACCCTCCTCCAGAAGAAGACTTCGCTTGA 672 0.5789 MAPRDKMAGVKVNGGVKEMHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPPDNVKNNQSPSQSSTVESSDRHPDAAAVVADSAPLDLNLAPAGAGYPAGGRFPFQHQFPSLDAMPAANQFLFFDAVLRAGMVGSQRYGFDYNRPVAASEFHATTSDSDSSSVIDLNHHEGDVTAKVGRGFDLDLNHPPPEEDFA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00596 223 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Rops11g00596 223 MobiDBLite consensus disorder prediction 70 103 - -
Rops11g00596 223 MobiDBLite consensus disorder prediction 79 99 - -
Rops11g00596 223 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Rops11g00596 223 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Rops11g00596 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 192 - -
Rops11g00596 223 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Rops11g00596 223 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Rops11g00596 223 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Rops11g00596 223 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Rops11g00596 223 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Rops11g00596 223 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00596 Rops-Chr11 8395006 8396188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00596 17 98 AP2-EREBP Transcription Factor Family AT5G44210 75.610 1.57e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops11g00596 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00596 K09286 - gmx:100170742 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00596 11 8395006 8396188 Rops11g00596 11 8395006 8396188 ECH
Rops7g01282 7 17421164 17422140 Rops11g00596 11 8395006 8396188 ECH