Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00595 ATGGCTTCTTCATCATCTTCGGCTTCTCGTGAGGGACACTACAGAGGGGTTAGGAAGCGACCATGGGGACGCTACGCTGCTGAGATACGTGACCCTTGGAAGAAGACACGTGTCTGGTTGGGAACATTTGATACTCCAGAAGAAGCTGCACTTGCCTACGACGGCGCCGCACGTTCCCTCCGTGGAGCAAAGGCTAAAACCAACTTCCCTCCGGCGCCGGTTGCCGCCGGACTCTGCCTTGACCTCAACGCTCCGTCTTCCGATCACCGCTGGCCCTCAGTCCCTTCAAGGAGCCTCGTCCTCAGCGAGTTTCTTCACCCCAGTGTTATCAACCCGCAGCAGCCTCCCCCGGCCGCGGTGGCCGGACACAGGCGCAGCGACGGTGGAGCCGTGCCGGAGACGTCGCAGACGGCGTCGTTTTTGGGACTGGTTAGGCGCGGGATCCCCATCGACTTGAATGAACCACCACCGTTGTGGCTATGA 483 0.6046 MASSSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAAGLCLDLNAPSSDHRWPSVPSRSLVLSEFLHPSVINPQQPPPAAVAGHRRSDGGAVPETSQTASFLGLVRRGIPIDLNEPPPLWL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00595 160 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Rops11g00595 160 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Rops11g00595 160 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Rops11g00595 160 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Rops11g00595 160 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Rops11g00595 160 MobiDBLite consensus disorder prediction 111 134 - -
Rops11g00595 160 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Rops11g00595 160 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Rops11g00595 160 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Rops11g00595 160 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 101 - -
Rops11g00595 160 FunFam Ethylene-responsive transcription factor 2 13 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00595 Rops-Chr11 8350890 8351876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00595 4 83 AP2-EREBP Transcription Factor Family AT1G28360 80.000 1.71e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops11g00595 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00595 - - cam:101504196 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00595 11 8350890 8351876 Rops11g00595 11 8350890 8351876 ECH