Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00593 ATGATAGTTCAGTGTATTCGTGGAACAGTTGCCGTAAGGCCCAAGATTTTGAGGATACAAAATGGGGCATGGGCTACATCCATCATCCATATAAGCAGAGAAGAGAATTTAACAAAAATTGGATTAAAAGAGAAACAAAAGGGGATTAGGGTTATCAGAGATGACACGTCGGAGAAAGGCGTGGTGGGTGGGGTCTACATGTACAATCAGGATTCTGATGTACAAGAACGGCACTATATTTTCTGTTCTGAGTTGGGTTTGGGGTGCTGTCTCTCCCTGAAAACCCCCTCTGCAATTCCGTTTCGATTTGGAGGTTCCATTTCGCTTGCCGCATCCTCTCTCTCTCTGCCTCCAATGTCGAATTCAGATTCTCCCATCGCCACCGATCCATCAATTGAAGAAGAAGATGAGGAGGAAGACCCCGAGGAAGAAGAAGAGGAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGTAGAAGTAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAAGAACAAGAACAAGAACAAGAACAAGGAGAAGAGGAGGAGGAAGAAGAAGTCGAGGTGGAGGAGGAGGAGGAAGAAGAAGAAGTAGAAGAGGAGGTGGAGGAGGAAGAAGAAGAAGTGGAAGAGGTGGTGGAGGAAGAAGAAGAAGTGGAAGAGGAGGAAGAGGTGGTGGAGGAAGAAGAAGCAGCAGCAGTAAAGGTGGAGGAGGAGGAGGACAAAGGGGCGGTGCCAGATTCTCTACCTGAAGCCGATAAGCTTGGCAAAGATTCAAGCCAACACATGGAATCTGAGGGGCCAGAAGAGAACTTGGGGCCAGTTTCTTCCGTGGCAGAAAAACCTGAAGTACTTCCACCATCTAGTATGAATTACATTAAAGAAAATGATGCCATGCTTAAAGCATCTGATCCTTTATGTGAGACACTAACATTGAAAAAGGAAGAGTTTCACCCGAATCATGAAATTTCAAGTCATCCAAAATCAAGACAAAACCTGATTTCTGCTGAAGATGGCAAAAGTCAAGTATTTGATGTTGATGTTGAAAGTGAAGGATCCCTTTTACAAAGGAAAACCTTTGGAGGATGCAGCGATCCTGGTTTATCTGTTGTTAAGGACATTGATTCCAGGGCCACCAAGTCATCTAGTGATACTGGAAAAGATGTGGCTATTGGCCTCATACAGAGAGATTGCTTTGCTGAGGATGCTGATGGTGGTCAGAATTCTAAGAGTAAAATTATGCAATCGGAGATGGAGTCAAGGGTTAATGTGGAACAAATGACATCAAGGATGACTAGAAGTCTGTCTCCCCGTGCTGAGATTAAAGATGGAAACAAACGGCCCACAATTATATGTGACTTTTTTGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTCAATAATACTGATGAGGAGGCTGAAGGAGACTTAGTTACAGCACATCAGAAGAGAGAATTGAAATTGGAAGAAGGTGTTAAGGAAAATGTTAAGAGATCAAGGATGAATGAGGAAGAAGCAAGCCCAAGTTGGCATCCATCTCATGAGAAACTGAAGTTTCCGTTGAGGGACAGCTTGTTTCCAGACAACAGATTTGCATTTAATGCATCAAACAATTATTTCAGCCCAAATCTTTTCTCGTATTCATCACGTGCAGAAGGAATGGCTACCATTCGTAACCAATCTATGTACAAAGGACATACCTCCACAGTTTTGAGTCATTCACCAAATTCAAGCTTGGTTACTCAATTTCCAGCTACAAGCATGTCACTCTCCCACCGGATTTCGGCACAGTCGGGATGTTCTTTGCCTTTTAATTCATCTATAGGGGCAAGGATTTTGGATTCTCAAAAGCTTCTGAACAGTGAGAAAGAATATCATGCCCCTAAGTCCTCTTTCTCTGGTTCAGAGCAGGAGGATTTGCCTCTAGTTGGTTCATCTAGGGTTCCGCCACATTTCCCTGGATATAAATCAAAATTCCGTTCTTATGATTGGGAACCTTCTGTGCCATTTCAACCATCCTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGTGATAGCATTGAGATACCTAATATAGGTGATGGGTCTTTGAAAGCTTCCCTTTTAATTCAAGGATCATCTATCCAGGCTTCACCACAGGTGCGGACTTATGGTGATTCTGCTGTAGTTGGGAAACACATGTCTGATCTTAATGAGGACAAAAGTTCTGTATCTTCTCATAATAGAGTTTATGAAAATGAGCCAAACAAGAGTTGTGTTGCTCGTGAAAAAGGTTGTCCTGCAACTGAAACAGAGATAACGTCAAAAACTTGCATGAATTACCAAAATGGTAAAATAGGCGTGGGACAACATACCTTTGGTGTCGAAGATACAAAAGCAGAGAAAGAATGGACTGAGCATGATGCTAGACATCATGGTGAAGGATCAAGGCACAAAAAGAGGAGAGCAGAGAAGGATAAGAAAATTCATGAAATGGATGTTGACTTTCAGACAGATGGCAGTGTGCAGAAAGAAACAAAGGCATTAAGAAATTTTCGTGCGGCCCTTGTTGATCTAGTGAAAGAGTTGTTGAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATGTTATGATAGTTAAAAAATCAGTTGACAAGGTTATTAGCACCTTAGAGCCCCACCAGATTCCAACCACCGTAGATACTGCTAAGCAATATGTTTCTTCAAGTCGGGTGAAAATTACAAAGCTGGTCAATGCATATGTCAATAAATATGGCAAATCTTGA 2841 0.4196 MIVQCIRGTVAVRPKILRIQNGAWATSIIHISREENLTKIGLKEKQKGIRVIRDDTSEKGVVGGVYMYNQDSDVQERHYIFCSELGLGCCLSLKTPSAIPFRFGGSISLAASSLSLPPMSNSDSPIATDPSIEEEDEEEDPEEEEEEVEEEEEEEEEEDEEEVEVEEEEEEEEEEEEQEQEQEQGEEEEEEEVEVEEEEEEEEVEEEVEEEEEEVEEVVEEEEEVEEEEEVVEEEEAAAVKVEEEEDKGAVPDSLPEADKLGKDSSQHMESEGPEENLGPVSSVAEKPEVLPPSSMNYIKENDAMLKASDPLCETLTLKKEEFHPNHEISSHPKSRQNLISAEDGKSQVFDVDVESEGSLLQRKTFGGCSDPGLSVVKDIDSRATKSSSDTGKDVAIGLIQRDCFAEDADGGQNSKSKIMQSEMESRVNVEQMTSRMTRSLSPRAEIKDGNKRPTIICDFFAKGWCIRGSSCSFLHIKDTVNNTDEEAEGDLVTAHQKRELKLEEGVKENVKRSRMNEEEASPSWHPSHEKLKFPLRDSLFPDNRFAFNASNNYFSPNLFSYSSRAEGMATIRNQSMYKGHTSTVLSHSPNSSLVTQFPATSMSLSHRISAQSGCSLPFNSSIGARILDSQKLLNSEKEYHAPKSSFSGSEQEDLPLVGSSRVPPHFPGYKSKFRSYDWEPSVPFQPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSSIQASPQVRTYGDSAVVGKHMSDLNEDKSSVSSHNRVYENEPNKSCVAREKGCPATETEITSKTCMNYQNGKIGVGQHTFGVEDTKAEKEWTEHDARHHGEGSRHKKRRAEKDKKIHEMDVDFQTDGSVQKETKALRNFRAALVDLVKELLKPFWHEGRLSKDAHVMIVKKSVDKVISTLEPHQIPTTVDTAKQYVSSSRVKITKLVNAYVNKYGKS* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00593 946 MobiDBLite consensus disorder prediction 114 128 - -
Rops11g00593 946 MobiDBLite consensus disorder prediction 114 296 - -
Rops11g00593 946 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 476 IPR000571 GO:0046872
Rops11g00593 946 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 153 945 - -
Rops11g00593 946 MobiDBLite consensus disorder prediction 242 271 - -
Rops11g00593 946 MobiDBLite consensus disorder prediction 129 241 - -
Rops11g00593 946 ProSiteProfiles Zinc finger C3H1-type profile. 452 479 IPR000571 GO:0046872
Rops11g00593 946 SUPERFAMILY CCCH zinc finger 452 476 IPR036855 GO:0046872
Rops11g00593 946 MobiDBLite consensus disorder prediction 817 842 - -
Rops11g00593 946 Coils Coil 134 245 - -
Rops11g00593 946 Gene3D - 444 521 - -
Rops11g00593 946 SMART c3hfinal6 452 478 IPR000571 GO:0046872
Rops11g00593 946 MobiDBLite consensus disorder prediction 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00593 Rops-Chr11 8316697 8326515 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g00593 zf-CCCH 4.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00593 - - aprc:113872594 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00593 11 8316697 8326515 Rops11g00593 11 8316697 8326515 ECH