Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00588 ATGGACGAAAGGTGGGGTGAGGGAAAGAGGAGCATGAAGTACAAGAAGGAGGAGGAGGAGGATGAGTATGAAGAAGAGGAAGAGGTAAGTGAGATGGGTTTTGAAGAGGATGGGAGGAAGAAAAGGGTGGTGACTGATCTCTACAGCAAGAGAGGGTCCAAAGCTGGAGGCTCAGTGCCACCTTCTTGTCAGGTGGACAATTGCAATGCTGATCTGAGTGATGCTAAGCCGTATCACCGGCGGCATAAGGTCTGTGAGCCCCATGCCAAGGCTTCTTCCGTACTTATTTCAGAGCTGCCGCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTTTCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAGTGCATCTGAATATTCGGGAGAAGGATATCAATGA 444 0.4842 MDERWGEGKRSMKYKKEEEEDEYEEEEEVSEMGFEEDGRKKRVVTDLYSKRGSKAGGSVPPSCQVDNCNADLSDAKPYHRRHKVCEPHAKASSVLISELPQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKSASEYSGEGYQ* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00588 147 Pfam SBP domain 63 136 IPR004333 GO:0003677
Rops11g00588 147 MobiDBLite consensus disorder prediction 1 36 - -
Rops11g00588 147 Coils Coil 9 29 - -
Rops11g00588 147 MobiDBLite consensus disorder prediction 1 18 - -
Rops11g00588 147 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Rops11g00588 147 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Rops11g00588 147 SUPERFAMILY SBT domain 61 140 IPR036893 GO:0003677|GO:0005634
Rops11g00588 147 PIRSF SBP 6 147 IPR017238 GO:0003677|GO:0003700|GO:0009908
Rops11g00588 147 MobiDBLite consensus disorder prediction 118 147 - -
Rops11g00588 147 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Rops11g00588 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 138 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00588 Rops-Chr11 8254647 8256584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00588 51 145 SBP-box Gene Family AT1G53160 70.833 9.52e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops11g00588 SBP 3.7e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00588 11 8254647 8256584 Rops11g00588 11 8254647 8256584 ECH
Rops7g01293 7 17554941 17556405 Rops11g00588 11 8254647 8256584 ECH