Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00586 ATGGAGCAAGGAGGAGATGGTGGAAGAGGTGAGATGAATAAGCAACCTCGTGATCGGAAGATGCAAGGAGAGGGACAGGTTCAGCATCTGCCTCAGCCTCAGCAACCGCAGAAGTGCCCTCGCTGCGATTCTCTCAACACCAAGTTCTGCTACTATAACAACTATAGCTTGTCGCAGCCTCGTTACTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACCTTGAGGAACGTACCTGTTGGTGGTGGTTGCCGTAAGGGTAAGCGCGCCAAAAATTCTTCATCTTCAAGCTCCGCTGAGAATTTTTCCCGGCCACCAGAGGCGGTGGTTCAAACCCAGCCAACAGTGGCAAGGGCTAAAGACCCTTCTTCAGCCGTGGCTTCCCCTCCTCCGGCCATCGGTTCCTTTTATCAAGGTGGTGGTGGTGGGTACTTGTCTTCTCTGGCAGCGATTCAATCTATCAACAACCCATCAAACCCTTTTGATCAGTCTCTGAATGTTGGGGGTGGAGGTGGTGTTGTTGTGCCTTCTTCTAATTTGGGTCTTTTATCTGGTTTTAATGTTGCTTCCGTTGGCTCACAAGGTCAAATTCGTCCATCTCAATTTTATCAAGTGGGTAGCGTAGGAAGGGAGGGAGTGTCTTTGTATACCCCAGAACAAGATTTGGTTCCATCCAGCATGGCTAATAGCAGTGCTGTTTCTCAACATGATTGGCCTCAGAGCTTCATCAATAATGCTGGTAACAGGGCCTCTGATGCATCTCTGTGGAGTACTATCAGTACCACTTCCATTGGTGGTAACTCTGATAGGAGTGCTGCTGCTGGTGCTGGTTCTTCTTTGCTCCCAAATCAATGGCCTGATCTGGCAGGGTTTGACCCTCCTGTTGCACCCTAG 900 0.4967 MEQGGDGGRGEMNKQPRDRKMQGEGQVQHLPQPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKNSSSSSSAENFSRPPEAVVQTQPTVARAKDPSSAVASPPPAIGSFYQGGGGGYLSSLAAIQSINNPSNPFDQSLNVGGGGGVVVPSSNLGLLSGFNVASVGSQGQIRPSQFYQVGSVGREGVSLYTPEQDLVPSSMANSSAVSQHDWPQSFINNAGNRASDASLWSTISTTSIGGNSDRSAAAGAGSSLLPNQWPDLAGFDPPVAP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00586 299 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Rops11g00586 299 MobiDBLite consensus disorder prediction 91 112 - -
Rops11g00586 299 MobiDBLite consensus disorder prediction 268 299 - -
Rops11g00586 299 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Rops11g00586 299 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Rops11g00586 299 MobiDBLite consensus disorder prediction 81 133 - -
Rops11g00586 299 MobiDBLite consensus disorder prediction 1 39 - -
Rops11g00586 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 194 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00586 Rops-Chr11 8165675 8167887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00586 13 109 C2C2-Dof Transcription Factor Family AT5G60200 59.000 4.93e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops11g00586 zf-Dof 9.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00586 - - gmx:102668884 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00586 11 8165675 8167887 Rops11g00586 11 8165675 8167887 ECH