Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00584 ATGACCTCGAGTAATGATGATCCATGGGACTGGAACGCGGATAAAATACTTCGATTATATTTGCATGATTATATGATCAAAAGGGGAATGCATAACACTGCTGAAATTTTCAAGAACGAAGCCCAGGTTTCTGACCATCCCGTTGATGGATTCCTGCATGAATGGTGGTCTATTTTCTATGAGGTATTTACCTCTAGGCAAGGGAGGAGTCAGGAGACTAGGCCAGAGTCCTCTAGTAAGGGCCCAAAGATGACAGATAATGCAAGGAATGGTCCCCTTCCTAGAATCCCTCTAATGAATGAGCGGAGACCCCAACCATTTCAAATCAGCTCCAGCTCTAACAACATGATGACAAAACCAGCAGCTTGTTTAATACCTTCAACAGTGTACGATAAAGAGCACCTTGGATATCTGGCACAAAATGTTGAGCCAAGTTTGTATGATCTTTTCGAGGCAAATAGCCTGAAGTTATTGTCAGGGACTAGTTCAAATCATCCACCTCGAGATGTAGGCAAGCAGGTCCAGATGCAAGTCTTAAAGGATGGTGGAATTGGTATGCGTGTGGGGAGGGATGTACCTAGGGACCCCCGGGTTATAATGCAAAATACAATGCTGCCTTTAGATGGACCTCATGAATCAAAAAACAATGAAGCTTTCAATCTCGTGCCACTAAATGGATGGCCAGTACATGTAGGTGATGGGAACCAGCTACTAACTTCACTTTTGCAAACACCGAACTATCAACAACAGTGTCAAGTGTTGAAAACACAAAACCAGGACGCAGTCCTTACTCAAGCACTTGCATGTACTCCTAAAAGTCAGACTTTCACAGTTCCTGGAAACTCTACCCAATGCAATAGTCAATTTCCGAAGATTCCCAATATTGAATCAAGTAATAAAGATAGGCAGATGATGGACCAAATCATTGAAACTGGAGAATCTCAATGCAAGCAGGATCAGCAGATCCAGATGCAGTCCCAGAACACCGAGAAGAGCAGAAAGAGAAAGACTACAGTATCCTTAAGACCTGGAGAAAGTGTCCGGGACTGTGTGGATGCAGCAGATGGAAAACCAATGGATGAAAATGTGGAGTCTTTCCTGTCTCTTGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGAGACGTATTTCAACTACATGCTGTAGAAATGAAAATAAGGGTTTTTCATTCGAAGAGGTTGGTTGCCTTCACTCGAGCAAAAGCAAGGTTTTGTCCAGCCATTTTTCATCAAATGGAAAAGTATTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACTTTTGATTGTCTTACTACTGCAGAAACACATTCACTTCTCATTACAGATGTTAGGTTTAGACCAGGTTCAACTATATTCGCGACATCTTCCTTTGATAGATCTGTAAGACTATGGGATGCAACCAGACCAACCAGATCGTTGTTCAAACTTACTGGGCATGCCGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGCTCATGTGATAGCAATGATGTAATTCGCTTGTGGAATGTGAATGAATGTGTCTGCATGCATACCACTAAGGGAGGTAGTAAACAAGTCAGATTCCAGCCTCATTATGGGAAGTTTCTGGCTACTGCTACCGGGAATAATATCAAAATAGTTGATGTTGAGACTGATAGCCTTCTGCACCATCTAAAGGGACATGTTAAAGATGTTCTTTGCATTTGTTGGGATAGAAGTGGAAACTATGTTGCCTCTGTCAGTGAAGATAGTGCGCGTGTCTGGTCTGCTGCATCAGATGGAAAATGTGTCAGTGAATTGCTTTCAAATGGGAACAGGTTTCAATCGTGCATATTTCATCCGGGTTATCTTAACCTCTTAATTATCGGTGGCTATCAGTCCCTGGAATTGTGGAGTCCAACCGAGAGCTGTAAAACATGGGTTGTTCCTGCACACAAGGGGTTAATTGCAGGACTGGCAGATTCACCCGAAGATGAATTGATTGCCTCGGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 2073 0.4269 MTSSNDDPWDWNADKILRLYLHDYMIKRGMHNTAEIFKNEAQVSDHPVDGFLHEWWSIFYEVFTSRQGRSQETRPESSSKGPKMTDNARNGPLPRIPLMNERRPQPFQISSSSNNMMTKPAACLIPSTVYDKEHLGYLAQNVEPSLYDLFEANSLKLLSGTSSNHPPRDVGKQVQMQVLKDGGIGMRVGRDVPRDPRVIMQNTMLPLDGPHESKNNEAFNLVPLNGWPVHVGDGNQLLTSLLQTPNYQQQCQVLKTQNQDAVLTQALACTPKSQTFTVPGNSTQCNSQFPKIPNIESSNKDRQMMDQIIETGESQCKQDQQIQMQSQNTEKSRKRKTTVSLRPGESVRDCVDAADGKPMDENVESFLSLENEHADHRVVPFSNLRRISTTCCRNENKGFSFEEVGCLHSSKSKVLSSHFSSNGKVLASAGHEKKVFIWNMETFDCLTTAETHSLLITDVRFRPGSTIFATSSFDRSVRLWDATRPTRSLFKLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRLWNVNECVCMHTTKGGSKQVRFQPHYGKFLATATGNNIKIVDVETDSLLHHLKGHVKDVLCICWDRSGNYVASVSEDSARVWSAASDGKCVSELLSNGNRFQSCIFHPGYLNLLIIGGYQSLELWSPTESCKTWVVPAHKGLIAGLADSPEDELIASASHDHCVKLWK* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 481 - -
Rops11g00584 690 MobiDBLite consensus disorder prediction 67 99 - -
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 534 IPR001680 GO:0005515
Rops11g00584 690 Gene3D - 540 690 IPR015943 GO:0005515
Rops11g00584 690 MobiDBLite consensus disorder prediction 313 328 - -
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 690 - -
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 690 IPR001680 GO:0005515
Rops11g00584 690 MobiDBLite consensus disorder prediction 313 342 - -
Rops11g00584 690 SUPERFAMILY WD40 repeat-like 401 690 IPR036322 GO:0005515
Rops11g00584 690 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 690 IPR044716 GO:0003714
Rops11g00584 690 Pfam WD domain, G-beta repeat 570 605 IPR001680 GO:0005515
Rops11g00584 690 Pfam WD domain, G-beta repeat 489 525 IPR001680 GO:0005515
Rops11g00584 690 Pfam WD domain, G-beta repeat 444 481 IPR001680 GO:0005515
Rops11g00584 690 Pfam WD domain, G-beta repeat 656 690 IPR001680 GO:0005515
Rops11g00584 690 Gene3D - 382 539 IPR015943 GO:0005515
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 448 IPR001680 GO:0005515
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 481 IPR001680 GO:0005515
Rops11g00584 690 CDD WD40 403 690 - -
Rops11g00584 690 SMART WD40_4 609 648 IPR001680 GO:0005515
Rops11g00584 690 SMART WD40_4 567 605 IPR001680 GO:0005515
Rops11g00584 690 SMART WD40_4 485 525 IPR001680 GO:0005515
Rops11g00584 690 SMART WD40_4 442 481 IPR001680 GO:0005515
Rops11g00584 690 SMART WD40_4 400 439 IPR001680 GO:0005515
Rops11g00584 690 SMART WD40_4 528 564 IPR001680 GO:0005515
Rops11g00584 690 SMART WD40_4 651 690 IPR001680 GO:0005515
Rops11g00584 690 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 45 IPR006594 GO:0005515
Rops11g00584 690 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 527 - -
Rops11g00584 690 MobiDBLite consensus disorder prediction 67 85 - -
Rops11g00584 690 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00584 Rops-Chr11 8093519 8099708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00584 462 647 Miscellaneous Gene Families AT5G08390 27.225 4.27e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Rops11g00584 WD40 0.0044 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00584 - - gsj:114387334 1009.21