Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00574 ATGGAGAACAACCCTACTTCATCTAGAGTTGACAGAAAATTCATTGAGAGAAATAGAAGAAATCAAATGAAAGCTCTCTACCGTAAGCTCAATTCACTAGTTCCTCATCAAAGCTCAAAGGAGGCAATTTCACTGCCGGATCAGCTAGAGGAAGCTACAAAGTACATAAAGAAATTACAGATTAACGTGGAGAAAATGAAGGAAAAGAAGAGCACCCTACTAGGAATTGAAAGGCCTAATGTGAGTAATATGAATAGAGGCAAGACCGTGGGGTTGAAGTCTCCAAAAATTGAGATCCATCAAATGGGTTTGGCCTTGGAGGTTGTTTTGGTAACTGGGTCGGATTGCCAGTTCATGTTCAATGAGACTATTCGTGTTCTTCATGAAGAAGGAGTAGATATTGTTAATGTCAGTTATAAAGTTAATGAAGATTCCGTTTTCCATTCAATACACTGTCAGGTTGGGGAATCTGCCAATGGAGCTAAGAAGATATCTGAGAGACTAATGAAGTTTGTGTCTGATGCTAGCTAA 531 0.3917 MENNPTSSRVDRKFIERNRRNQMKALYRKLNSLVPHQSSKEAISLPDQLEEATKYIKKLQINVEKMKEKKSTLLGIERPNVSNMNRGKTVGLKSPKIEIHQMGLALEVVLVTGSDCQFMFNETIRVLHEEGVDIVNVSYKVNEDSVFHSIHCQVGESANGAKKISERLMKFVSDAS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00574 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 73 IPR036638 GO:0046983
Rops11g00574 176 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 172 - -
Rops11g00574 176 SMART finulus 13 65 IPR011598 GO:0046983
Rops11g00574 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Rops11g00574 176 Coils Coil 49 69 - -
Rops11g00574 176 Gene3D - 1 86 IPR036638 GO:0046983
Rops11g00574 176 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Rops11g00574 176 FunFam Transcription factor bHLH162 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00574 Rops-Chr11 7923942 7924795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00574 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 46.667 5.94e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g00574 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00574 - - gmx:100814407 275.404