Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00555 ATGGCATTTCAGCACTACATTTCCCCGGAATTGAAAACCATCCCAAATGCTGTGACAGAGACAGAAAATTCCAATGGTTGTTTCGATTGCAACATCTGCTTAGACTTTGCGCATGAACCGGTAGTTACCCTCTGTGGCCACCTTTACTGCTGGCCCTGCATCTATAAGTGGCTCCATGGTCAAAGTGATTCTCTTGCATCTGATGAACACCCTCAATGTCCTGTATGTAAGGTTGAAATATCCCATTCAACAATGATCCCATTGTATGGCCGGGGCCAGGCCTCAGCTGGTGGGAAAGCATCCTGTTGTGATATTTTTATACCACCAAGACCACCCGCTTCAGGTGCTCAAGCTTTTTTGGCATCTTCATCTCAAAGCGGTCAGCAGCTTCCATATCGTAACCCACATCATGGTCAACATTTCAGCTCCCCTCTATCCCAAGAAGAGGGTGCCAGTTCACAAATGCTCAATCTTGGTGCCTCCATGACTCCAGGATCTCACCACCCTGTGGTTGGGATGTTTGGAGATATGGTTTATGCTGGCAACTCAGAAAATTTGTATGCCTACCCGAATTCTTATCAGATGATGGGAAGTAATAGCTCCAGATTAAGAAGGCAAGAGATGCGAGTAGACAAATTTTTGAACAGAATTTCAATTTTTCTCTTTTGCTGCTTTCTTCTGTGCCTTATTGTCTTCTGA 699 0.4492 MAFQHYISPELKTIPNAVTETENSNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHGQSDSLASDEHPQCPVCKVEISHSTMIPLYGRGQASAGGKASCCDIFIPPRPPASGAQAFLASSSQSGQQLPYRNPHHGQHFSSPLSQEEGASSQMLNLGASMTPGSHHPVVGMFGDMVYAGNSENLYAYPNSYQMMGSNSSRLRRQEMRVDKFLNRISIFLFCCFLLCLIVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00555 232 SMART ring_2 30 76 IPR001841 -
Rops11g00555 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops11g00555 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Rops11g00555 232 CDD RING-HC_AtRMA-like 28 77 - -
Rops11g00555 232 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Rops11g00555 232 MobiDBLite consensus disorder prediction 127 146 - -
Rops11g00555 232 SUPERFAMILY RING/U-box 26 89 - -
Rops11g00555 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 97 IPR013083 -
Rops11g00555 232 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Rops11g00555 232 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00555 Rops-Chr11 7667879 7670180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00555 9 218 C3H Transcription Factor Family AT4G27470 40.271 2.79e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00555 K10666 - gmx:100816864 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00555 11 7667879 7670180 Rops11g00555 11 7667879 7670180 ECH