Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00550 ATGGCTGTTTCTGGCCTTCGTTTCTTATTGGTTTACGATCTTATGCACAACGGTAACCTCCACGACACCCTTCTTTGTCGCAAGTGCCCTAAACTCATGCTATGGAAGAACTGTTTCTCCATCGCCGTTGACATTGCTAAAGGGATTCACTACCTTCATTCCTCTGACCCACCAATCATTCATGGTGATATTAAGCCCGGTAACGTGCTTCTTGACTGTTGCTTTAATGCCAAAATCGCGGATTTTGGACTTGCAAGTTGTATATATACTACTAAGTTAGACCATAACCAATTGTCATGCACATCTACCAATTTCACACTTCACACTCCAGTTCTTGTTAATTATCTATTCACAGACGGAGGTTTTGCTTTTCCAATTTGGGCTCTCTTCTTAGTGGTACTGGTACTGCCCTATTTGCTTTTTATGATTGGAGAGTACAATCATAGTGGTTCAAGCATAATTGGGATGGAAGTGTTTGGCCAGAATGTAATCACATTAGATGAAGAAAAAGCATTAAATTGCTTGTTTGATGCCTTTGGCTCTGCTTTCTCTGTTGAGGAAATATCTTCTGCCTATTGCAAGGCAAGCCGGAATGCAGACTTGGCTGGGGAAATTTTGTATGAAATGCAGGGAAGCTCCTCAACCTCTGCAACCCAATCGTCTAATTCAGATGCCAGGGCAGAAGAGTCTTCAGAGTCATCTGATGGATATTCCTTTGTAAATTCCTGCCAAGAGGGAAAAAACTTAAGGTCCAAAGTTTGCCCAGCTTCAACTGGCTCTGTTTCAAACATTATTGGTAAGGATTATGTTAGACCCATGCCACCAGCAAGTGGGTCTCATGGCATGACTAAACCAATTAAGTTGGATGCAAAGGGGCTGCCTATGACTGGAATCTGGCGTGAAAAAAGTACGCCAAATATCTTAAAACATCAGCTTCACCAGGATATGGAAGATTTCTTATTTAAGATGCTTGGAGATGGCTTTCAGCTTGACAGAAACATGATACGGGAAATTCTTGATACTTGTGGGTATGACATGCAGAAGAGCTTGGAAAAACTACTAGATAGATCAAATATGGCTTTGGACAAAAGGACATCTGTTGTTGGCGAGTCAGTTGGGAAGTTTACAGATATGAAACCAAAATCTGAAGCACCTTCATCTGAAAGAAAATCTCAGGATTTAGATTATCTCAGAGGTGATAGAAACATAGTTTCAGTTGAAGGAGTGGAATCGCATCAGCCACAGAAAGGGAGACGTGACCTTGAGCAAGAAGTCTTGTCTCATTTGTTTAATTACCGTGAGCATTCTGAGGAGTCTCCCAAAAAAATTGTAAAGAATTTGAAAAATAATTCACGATATGGACGTGCGGTGCTTGAACCTCCCAAAGACTCGAAGGAAGAATACAAGATCGACATGAACTTCTCACGACGAGAAAATGAAGATGATGCTGAGGACGAGGAAGACTACCAGCAGTTGAGGACAGCTGTGAAGGAGTATCGAGCAACAATGAATGAATATTATAAAGCAGCAGTCGATGCATTTGCTAAGGGGGATCATGCCAAAGCAGGAAAACTTTTAGAGCAGGGGCAATTTTTTCTCCAAAAAGTTCGTGAAGCTGATGAAGAATCTAGCAAGATGATTCTTGAAAACAAGACTACAGAAGCACAAGAAATGGTGCTTGACTTGCATGACCATGAACCAAAGGAGGCCATACGTCTACTGAAGAGTCATCTTTCTTGGCTTTATGGCATTTCAGCATTTGAGTACCTCAAGGTTATAGTTGATGCAAATGATCAAGATAACACTAAAGGGTCTCGCACACGACGCGTAATAATAAAACTATTAGAGCAGGAATCTATAAAGTGGTTGAAAGGAGAAACGGCTGGTACAATATTGATCCGCATGGATAGCACAGAGCCTAAACGTTTGAGTTTTGTTAAAACATAG 1947 0.4114 MAVSGLRFLLVYDLMHNGNLHDTLLCRKCPKLMLWKNCFSIAVDIAKGIHYLHSSDPPIIHGDIKPGNVLLDCCFNAKIADFGLASCIYTTKLDHNQLSCTSTNFTLHTPVLVNYLFTDGGFAFPIWALFLVVLVLPYLLFMIGEYNHSGSSIIGMEVFGQNVITLDEEKALNCLFDAFGSAFSVEEISSAYCKASRNADLAGEILYEMQGSSSTSATQSSNSDARAEESSESSDGYSFVNSCQEGKNLRSKVCPASTGSVSNIIGKDYVRPMPPASGSHGMTKPIKLDAKGLPMTGIWREKSTPNILKHQLHQDMEDFLFKMLGDGFQLDRNMIREILDTCGYDMQKSLEKLLDRSNMALDKRTSVVGESVGKFTDMKPKSEAPSSERKSQDLDYLRGDRNIVSVEGVESHQPQKGRRDLEQEVLSHLFNYREHSEESPKKIVKNLKNNSRYGRAVLEPPKDSKEEYKIDMNFSRRENEDDAEDEEDYQQLRTAVKEYRATMNEYYKAAVDAFAKGDHAKAGKLLEQGQFFLQKVREADEESSKMILENKTTEAQEMVLDLHDHEPKEAIRLLKSHLSWLYGISAFEYLKVIVDANDQDNTKGSRTRRVIIKLLEQESIKWLKGETAGTILIRMDSTEPKRLSFVKT* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00550 648 Gene3D - 536 635 IPR036063 -
Rops11g00550 648 MobiDBLite consensus disorder prediction 372 394 - -
Rops11g00550 648 MobiDBLite consensus disorder prediction 213 239 - -
Rops11g00550 648 Gene3D Transferase(Phosphotransferase) domain 1 2 112 - -
Rops11g00550 648 PANTHER NUCLEAR RNA EXPORT FACTOR SDE5-RELATED 156 647 - -
Rops11g00550 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Rops11g00550 648 SMART DUF1771_2 488 553 IPR013899 -
Rops11g00550 648 ProSiteProfiles Protein kinase domain profile. 1 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00550 648 Pfam Domain of unknown function (DUF1771) 489 550 IPR013899 -
Rops11g00550 648 Coils Coil 489 509 - -
Rops11g00550 648 SUPERFAMILY Protein kinase-like (PK-like) 7 95 IPR011009 -
Rops11g00550 648 Pfam Protein tyrosine and serine/threonine kinase 7 94 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00550 Rops-Chr11 7629764 7637093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00550 10 107 Receptor kinase-like Gene Family AT5G35380 44.000 3.36e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Rops11g00550 PK_Tyr_Ser-Thr 2.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00550 - - gmx:100808122 642.114