Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00536 ATGTCTGACATCGAAAATCACGCCTTCCTTCGTGGTGGTTCATCATCCGACAAGTTAATTTCTCGTGGATCTGCTCGTGAGAGTATGAGGATTAGAAACCAAGATGGAAAGAGGAAAACTTTTCATGACCGCCATCATAGAGACTATAAGGATGGAGGGTTTAAAGGAAGGGACAAATATGACAGTTATAATCGTCACCGCAGCCGTGATTATGATAGGCATAATGACCATGTTCAAGATGGAGATACAAAGCACAAATACGGAGCACATTCAAAGAGATCCCGGAGAGAATCTAGATCAGGATCCAGATCCCCTTCTCGTTCAGAAAGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTTCTGCTGGTGTAACACCTGCTGTTTCAGTTAATAATGCAGGGCAAATGCTGGGCATTACACATATGATTCAAGGAACTGCCCAAAATTTGTCACCATTTGGGATATCGCAGATTGGAGCACTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCACGCACGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTGACTAATGAGCAGGCAATTGCAGCATTCTTCAGCCATGTCATGACTGCCATTGGGGGAAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGAGTTGCTGTGAGGGTTCGTAGGCCAACAGACTATAACCCTTCATTAGCTGCAGCTCTAGGTCCTTGCCAGCCAAGTCCATATCTTAACTTATCTGCTGTTGGACTATCTGTAGGGGCAATTGGTGGAACTGAAGGAGTTGATCGCATCTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAAATGAGAGAATTGCTCCAAGCTTTTGGTCCTCTCCGGTCTTTTGATCTAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGTCTTAAAATGGGTGATAAAACATTGACTGTAAGACGTGCTACTGTCAGTGGACATTCTAAAACAGAACAGGAGCACATCTTTGCACAGGCTCAACAGCATATCTCTATGCAGAAAATAGCTTTGGAAGTGGGTGGGTTAAATGTTCCAGGAGTGGAAAGAGTGCCAACAGCAAATGATGAAAGCCCCACTAAAGTTTTATGTTTGAGTGAGGCCATTACTGCTGATCAATTGATGGATAATGAGGAGTATCAAGAAATATTAGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTTGTTATTCCTCGTCCAAATCACAGTGGTGGAGAGCTGCCTCCAGGTATCGGAAAGGTGTTCTTGGAATACTCTGATAGCGCTGGTTGTTTCGCCGCGAAAAATGCACTCAATGGTAGGAAATTTGGGGGCAATATTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCACAGTGAAGGTGGAGATCTCGGAGGAGCTGAGGAACGAGAGGATGCAAAGATGAACGTTGTTGGGGAAATTGCTGAAACAAAGTGA 1650 0.4382 MSDIENHAFLRGGSSSDKLISRGSARESMRIRNQDGKRKTFHDRHHRDYKDGGFKGRDKYDSYNRHRSRDYDRHNDHVQDGDTKHKYGAHSKRSRRESRSGSRSPSRSESKRTSGFDMAPPSAGVTPAVSVNNAGQMLGITHMIQGTAQNLSPFGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPLTNEQAIAAFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPCQPSPYLNLSAVGLSVGAIGGTEGVDRIFVGGLPYYFTEAQMRELLQAFGPLRSFDLVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQHISMQKIALEVGGLNVPGVERVPTANDESPTKVLCLSEAITADQLMDNEEYQEILEDMRDECCKFGTLINVVIPRPNHSGGELPPGIGKVFLEYSDSAGCFAAKNALNGRKFGGNIVTAVYYPEEKYHSEGGDLGGAEEREDAKMNVVGEIAETK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00536 549 CDD RRM1_U2AF65 178 260 - -
Rops11g00536 549 MobiDBLite consensus disorder prediction 23 87 - -
Rops11g00536 549 PANTHER RNA-BINDING PROTEIN 25 523 - -
Rops11g00536 549 SUPERFAMILY RNA-binding domain, RBD 90 259 IPR035979 GO:0003676
Rops11g00536 549 MobiDBLite consensus disorder prediction 1 128 - -
Rops11g00536 549 FunFam U2 snRNP auxiliary factor large subunit 422 525 - -
Rops11g00536 549 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 26 523 IPR006529 GO:0003723|GO:0005634|GO:0006397
Rops11g00536 549 FunFam U2 snRNP auxiliary factor large subunit 174 275 - -
Rops11g00536 549 Gene3D - 297 401 IPR012677 -
Rops11g00536 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Rops11g00536 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Rops11g00536 549 SMART rrm1_1 180 258 IPR000504 GO:0003723
Rops11g00536 549 SMART rrm1_1 300 373 IPR000504 GO:0003723
Rops11g00536 549 SMART rrm1_1 433 514 IPR000504 GO:0003723
Rops11g00536 549 FunFam U2 snRNP auxiliary factor large subunit 276 388 - -
Rops11g00536 549 CDD RRM3_U2AF65 425 514 - -
Rops11g00536 549 Gene3D - 174 272 IPR012677 -
Rops11g00536 549 SUPERFAMILY RNA-binding domain, RBD 300 520 IPR035979 GO:0003676
Rops11g00536 549 Gene3D - 421 525 IPR012677 -
Rops11g00536 549 CDD RRM2_U2AF65 299 375 - -
Rops11g00536 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 262 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00536 Rops-Chr11 7423923 7438369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00536 293 391 Eukaryotic Initiation Factors Gene Family AT1G71770 25.253 9.71e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00536 K12837 - vvi:100243034 679.093