Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00533 ATGAACTTTTGCTGCTTTGGAGGCTCATCTATAAAGAAGGAAAGACGTCCTTCTCATATTTGCACTGAAATTGATGGCTATCCGCTAGATAATGTTAAGGATTTTTCTGATAAAGAACTGAGATTGGCTACCGATAATTATGATTTAAACAATAAGATAGGACAGGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAAAGATGGAAGAAGGGTAGCAGTGAAGACCCTTTCAGCTGGGTCGAAGCAGGGAGTTCGTGAATTTTTAACTGAAATTAAAACTTTATCAAATGTTAAACATCCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAATCGTACACTAGTCTACGAGTATGTGGAAAATGGCAACCTTGGTAGTGCATTACTTAGCACAAAGAGTAAAAACATCAAACTAGACTGGAGAAAAAGATCTGCAATTTGCATAGGTACTGCTAAAGGTCTTGCATATCTTCATGAAGAACTTGTGCCGCCTATTGTGCATAGAGACATCAAAGCTAGTAATGTAGTACTTGACAGAGACTTTAATCCGAAAATAGGTGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGCCAGTTAACCAAGAAGGCTGATGTATACAGCTTTGGAATTCTTATACTTGAAATAATTAGTGGTAAAAGCAGCGCAAGGACAAACTTCGGAGGGTCGTATAAATTCCTCTTGGAATGGGCCTGGCAACTTCATGAAGAGGGGAAATTGTTGGAGCTAGTAGATCCAGACATGAAAGAATTTCCTGAGAAAGAGGTAATAAGGTACATGAAGGTTGCTTTTTTCTGCACACAATCAGCAGCAAACAGAAGGCCATTGATGACTCAGGTGGTTGATATGCTCTCCAAGGAAGACATACAGCTCAATGAGAAACAACTTACAGCACCAGGACTCTTCATGGATGCAGGAGAATCCTCTCGAAAGAACTCATACCCTGACTCTTCAATCTATCAGATTAGTGCTATTACTCAGGTGGCCCCACGGTGA 1095 0.4009 MNFCCFGGSSIKKERRPSHICTEIDGYPLDNVKDFSDKELRLATDNYDLNNKIGQGGFGTVYQGTLKDGRRVAVKTLSAGSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPNRTLVYEYVENGNLGSALLSTKSKNIKLDWRKRSAICIGTAKGLAYLHEELVPPIVHRDIKASNVVLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGILILEIISGKSSARTNFGGSYKFLLEWAWQLHEEGKLLELVDPDMKEFPEKEVIRYMKVAFFCTQSAANRRPLMTQVVDMLSKEDIQLNEKQLTAPGLFMDAGESSRKNSYPDSSIYQISAITQVAPR* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00533 364 CDD STKc_IRAK 53 319 - -
Rops11g00533 364 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Rops11g00533 364 Pfam Protein tyrosine and serine/threonine kinase 49 317 IPR001245 GO:0004672|GO:0006468
Rops11g00533 364 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 343 - -
Rops11g00533 364 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 330 - -
Rops11g00533 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Rops11g00533 364 SUPERFAMILY Protein kinase-like (PK-like) 29 317 IPR011009 -
Rops11g00533 364 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00533 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Rops11g00533 364 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Rops11g00533 364 SMART serkin_6 47 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00533 364 FunFam cold-responsive protein kinase 1 18 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00533 Rops-Chr11 7363251 7366817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00533 35 317 Receptor kinase-like Gene Family AT1G53430 57.042 8.86e-105 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops11g00533 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00533 - - gmx:100809588 586.26